gene15627-v1.0-hybrid (Fragaria vesca)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 gene15627-v1.0-hybrid T023212_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna15627.1-v1.0-hybrid B3 97 205

Links

Other B3 family TFs
Other Fragaria vesca TFs

280 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.929
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.929
Ca_25633 Cicer arietinum Ca_25633 I 0.919
PK04952.1 Cannabis sativa PK04952.1 I 0.919
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.911
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.909
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.909
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.909
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.891
TCM_022729 Theobroma cacao TCM_022729 N 0.889
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.889
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.881
30032.m000462 Ricinus communis 30032.m000462 N 0.881
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.881
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.879
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.871
POPTR_0006s22460 Populus trichocarpa POPTR_0006s22460 N 0.871
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.871
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.871
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.861
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.861
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.861
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.859
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.851
Cla017937 Citrullus lanatus Cla017937 I 0.851
MDP0000229742 Malus domestica MDP0000229742 N 0.851
Bra005886 Brassica rapa Bra005886 N 0.848
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.848
OB12G13420 Oryza brachyantha OB12G13420 N 0.842
Ca_00826 Cicer arietinum Ca_00826 N 0.842
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.842
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.838
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.838
Bo3g003800 Brassica oleracea Bo3g003800 N 0.832
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.832
BRADI4G42167 Brachypodium distachyon BRADI4G42167 N 0.828
MLOC_56530 Hordeum vulgare MLOC_56530 N 0.828
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.828
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.828
ARF31 Arabidopsis thaliana AT2G36080 N 0.822
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.822
Bo01079s020 Brassica oleracea Bo01079s020 N 0.822
Bra017262 Brassica rapa Bra017262 N 0.822
OPUNC12G03300 Oryza punctata OPUNC12G03300 N 0.822
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.822
mgf019085m Mimulus guttatus mgf019085m N 0.822
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.822
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.822
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.822
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.822
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.822
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.822
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.822
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.822
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.821
Bo5g136360 Brassica oleracea Bo5g136360 N 0.818
GLYMA03G35700 Glycine max GLYMA03G35700 N 0.818
PGSC0003DMG400028159 Solanum tuberosum PGSC0003DMG400028159 N 0.818
Solyc10g083210.1 Solanum lycopersicum Solyc10g083210.1 N 0.818
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.812
Bo4g035110 Brassica oleracea Bo4g035110 N 0.812
Bra001411 Brassica rapa Bra001411 N 0.812
Bra005301 Brassica rapa Bra005301 N 0.812
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.812
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.812
Gorai.006G152400 Gossypium raimondii Gorai.006G152400 N 0.812
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.812
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.812
F775_31255 Aegilops tauschii F775_31255 N 0.806
BGIOSGA034469 Oryza indica BGIOSGA034469 N 0.802
Bo3g064320 Brassica oleracea Bo3g064320 N 0.802
Bo9g176470 Brassica oleracea Bo9g176470 N 0.802
Bra034828 Brassica rapa Bra034828 N 0.802
GLYMA19G38340 Glycine max GLYMA19G38340 N 0.802
OBART11G03590 Oryza barthii OBART11G03590 N 0.802
OGLUM11G03240 Oryza glumaepatula OGLUM11G03240 N 0.802
OLONG_005139 Oryza longistaminata OLONG_005139 N 0.802
OMERI11G03310 Oryza meridionalis OMERI11G03310 N 0.802
ONIVA07G22860 Oryza nivara ONIVA07G22860 N 0.802
ORGLA11G0033600 Oryza glaberrima ORGLA11G0033600 N 0.802
ORUFI11G03500 Oryza rufipogon ORUFI11G03500 N 0.802
OS11G0156000 Oryza sativa OS11G0156000 N 0.802
Sb05g003450 Sorghum bicolor Sb05g003450 N 0.802
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.802
Eucgr.A02625 Eucalyptus grandis Eucgr.A02625 N 0.802
LjSGA_011266.1 Lotus japonicus LjSGA_011266.1 N 0.802
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.800
BRADI4G25170 Brachypodium distachyon BRADI4G25170 N 0.798
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.798
OPUNC04G20430 Oryza punctata OPUNC04G20430 I 0.797
GSMUA_Achr6G35600_001 Musa acuminata GSMUA_Achr6G35600_001 N 0.792
OB11G12920 Oryza brachyantha OB11G12920 N 0.792
OPUNC11G03320 Oryza punctata OPUNC11G03320 N 0.792
Si027632m.g Setaria italica Si027632m.g N 0.792
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.792
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.792
Pavir.Ha01761 Panicum virgatum Pavir.Ha01761 N 0.792
Pavir.Hb01814 Panicum virgatum Pavir.Hb01814 N 0.792
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N 0.788
mgf018965m Mimulus guttatus mgf018965m N 0.788
BGIOSGA036599 Oryza indica BGIOSGA036599 N 0.782
LPERR12G03290 Leersia perrieri LPERR12G03290 N 0.782
MLOC_11014 Hordeum vulgare MLOC_11014 N 0.782
OBART12G03490 Oryza barthii OBART12G03490 N 0.782
OGLUM12G04180 Oryza glumaepatula OGLUM12G04180 N 0.782
ONIVA12G03130 Oryza nivara ONIVA12G03130 N 0.782
ORGLA12G0033700 Oryza glaberrima ORGLA12G0033700 N 0.782
ORUFI12G03970 Oryza rufipogon ORUFI12G03970 N 0.782
GSMUA_Achr9G02600_001 Musa acuminata GSMUA_Achr9G02600_001 I 0.778
Lus10004226.g Linum usitatissimum Lus10004226.g N 0.778
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.775
Bra041023 Brassica rapa Bra041023 N 0.772
F775_02500 Aegilops tauschii F775_02500 N 0.772
GSMUA_Achr3G19210_001 Musa acuminata GSMUA_Achr3G19210_001 N 0.772
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.772
Traes_4AL_4F2E6EF28 Triticum aestivum Traes_4AL_4F2E6EF28 N 0.772
Traes_4BS_5FECB39FA Triticum aestivum Traes_4BS_5FECB39FA N 0.772
Traes_4DS_E6210A614 Triticum aestivum Traes_4DS_E6210A614 N 0.772
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.768
GRMZM5G805685 Zea mays GRMZM5G805685 N 0.768
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.768
OB03G11610 Oryza brachyantha OB03G11610 N 0.768
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.768
Si036864m.g Setaria italica Si036864m.g N 0.768
Si010849m.g Setaria italica Si010849m.g N 0.762
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.758
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.758
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.758
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.758
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.758
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.757
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.755
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.755
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.752
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.752
OBART03G01650 Oryza barthii OBART03G01650 N 0.752
OBART04G22880 Oryza barthii OBART04G22880 I 0.752
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.752
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.752
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.752
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.752
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.752
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.752
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.752
OS03G0120900 Oryza sativa OS03G0120900 N 0.752
OS04G0581400 Oryza sativa OS04G0581400 I 0.752
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.752
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.752
Sb08g003550 Sorghum bicolor Sb08g003550 N 0.752
Si011823m.g Setaria italica Si011823m.g N 0.752
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.752
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.752
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.752
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.752
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.752
PK11025.1 Cannabis sativa PK11025.1 I 0.752
MLOC_48938 Hordeum vulgare MLOC_48938 N 0.750
LPERR11G03050 Leersia perrieri LPERR11G03050 N 0.747
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.747
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.747
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.747
Traes_2AL_25382F498 Triticum aestivum Traes_2AL_25382F498 N 0.747
Pm024248 Prunus mume Pm024248 I 0.747
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.747
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.743
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.743
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.743
Si039972m.g Setaria italica Si039972m.g N 0.743
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.743
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.743
Bra009171 Brassica rapa Bra009171 N 0.741
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.741
GRMZM2G328742 Zea mays GRMZM2G328742 N 0.740
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.737
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.737
OBART10G17010 Oryza barthii OBART10G17010 N 0.737
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.737
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.737
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.737
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.737
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.737
OS10G0537100 Oryza sativa OS10G0537100 N 0.737
TCM_015590 Theobroma cacao TCM_015590 I 0.737
30076.m004471 Ricinus communis 30076.m004471 I 0.737
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.737
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.737
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.737
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.737
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.737
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.733
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.733
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.733
OB02G35380 Oryza brachyantha OB02G35380 I 0.733
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.733
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.733
TCM_005014 Theobroma cacao TCM_005014 I 0.733
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.733
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.733
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.733
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.733
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.733
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.733
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.733
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.733
Bo6g079210 Brassica oleracea Bo6g079210 N 0.727
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.727
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.727
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.727
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.727
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.727
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.726
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.723
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.723
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.723
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.723
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.723
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.723
OBART02G28100 Oryza barthii OBART02G28100 N 0.723
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.723
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.723
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.723
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.723
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.723
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.723
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.723
OS02G0683500 Oryza sativa OS02G0683500 N 0.723
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.723
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.723
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.723
Si020241m.g Setaria italica Si020241m.g N 0.723
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.723
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.723
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.723
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.723
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.723
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.723
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.723
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.723
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.723
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.723
PK21157.1 Cannabis sativa PK21157.1 I 0.723
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.723
OB01G36520 Oryza brachyantha OB01G36520 I 0.722
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.722
Bra040478 Brassica rapa Bra040478 I 0.720
TRIUR3_01515 Triticum urartu TRIUR3_01515 N 0.720
Cla014858 Citrullus lanatus Cla014858 N 0.717
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.717
MLOC_44012 Hordeum vulgare MLOC_44012 I 0.714
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.713
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.713
Cla006845 Citrullus lanatus Cla006845 I 0.713
Pm028725 Prunus mume Pm028725 N 0.713
30068.m002615 Ricinus communis 30068.m002615 I 0.713
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.713
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.713
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.713
mgf023769m Mimulus guttatus mgf023769m N 0.713
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.713
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.713
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.713
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.713
Bo4g197410 Brassica oleracea Bo4g197410 I 0.710
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.707
NGA1 Arabidopsis thaliana AT2G46870 N 0.707
Bra000434 Brassica rapa Bra000434 N 0.707
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.707
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.707
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.707
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.707
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.707
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.707
OB10G24100 Oryza brachyantha OB10G24100 N 0.705
Bo3g039420 Brassica oleracea Bo3g039420 N 0.703
Bra003482 Brassica rapa Bra003482 N 0.703
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.703
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.703
Ca_01368 Cicer arietinum Ca_01368 I 0.703
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.703
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.703