Pavir.Ab02711 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.Ab02711 T023785_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.703 0.703
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab02711.1.p B3 103 208
Pavir.Ab02711.2.p B3 103 208
Pavir.Ab02711.3.p B3 103 208

Links

Other B3 family TFs
Other Panicum virgatum TFs

274 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si020241m.g Setaria italica Si020241m.g N 0.970
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.929
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.921
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.921
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.921
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.881
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.871
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.861
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.861
OB02G35380 Oryza brachyantha OB02G35380 I 0.861
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.861
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.851
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.851
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.851
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.851
OBART02G28100 Oryza barthii OBART02G28100 N 0.851
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.851
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.851
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.851
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.851
OBART10G17010 Oryza barthii OBART10G17010 N 0.851
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.851
OS10G0537100 Oryza sativa OS10G0537100 N 0.851
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.851
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.851
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.851
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.851
OS02G0683500 Oryza sativa OS02G0683500 N 0.851
Traes_2DL_2D1980C7B Triticum aestivum Traes_2DL_2D1980C7B N 0.850
OLONG_022770 Oryza longistaminata OLONG_022770 N 0.850
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.845
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.842
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.842
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.842
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.842
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.842
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.832
Si011823m.g Setaria italica Si011823m.g N 0.832
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.832
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.832
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.832
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.832
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.832
OBART04G22880 Oryza barthii OBART04G22880 I 0.832
OS04G0581400 Oryza sativa OS04G0581400 I 0.832
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.832
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.832
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.822
OB03G11610 Oryza brachyantha OB03G11610 N 0.822
OS03G0120900 Oryza sativa OS03G0120900 N 0.822
OBART03G01650 Oryza barthii OBART03G01650 N 0.822
Si036864m.g Setaria italica Si036864m.g N 0.822
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.822
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.822
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.822
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.822
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.822
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.822
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.822
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.822
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.822
OB10G24100 Oryza brachyantha OB10G24100 N 0.821
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.820
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.812
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.812
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.812
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.812
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.808
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.802
30068.m002615 Ricinus communis 30068.m002615 I 0.802
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.802
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.802
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.802
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.792
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.792
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.792
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.792
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.792
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.792
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.789
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.786
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.782
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.782
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.782
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.782
Cla006845 Citrullus lanatus Cla006845 I 0.782
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.782
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.782
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.782
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.782
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.782
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.782
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.782
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.782
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.782
AC216872.3_FG002 Zea mays AC216872.3_FG002 N 0.775
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.772
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.772
PK21157.1 Cannabis sativa PK21157.1 I 0.772
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.772
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.772
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.772
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.772
Pm024248 Prunus mume Pm024248 I 0.772
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.772
TRIUR3_29732 Triticum urartu TRIUR3_29732 N 0.772
TCM_005014 Theobroma cacao TCM_005014 I 0.772
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.772
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.772
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.772
Ca_01368 Cicer arietinum Ca_01368 I 0.772
Pm028725 Prunus mume Pm028725 N 0.772
Si039972m.g Setaria italica Si039972m.g N 0.772
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.772
Cla017937 Citrullus lanatus Cla017937 I 0.772
30076.m004471 Ricinus communis 30076.m004471 I 0.772
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.772
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.772
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.772
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.772
TCM_015590 Theobroma cacao TCM_015590 I 0.762
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.762
Cla005055 Citrullus lanatus Cla005055 N 0.762
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.762
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.762
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.762
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.762
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.762
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.762
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.762
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.762
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.762
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.762
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.762
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.762
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.762
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.762
PK11025.1 Cannabis sativa PK11025.1 I 0.762
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.762
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.752
mgf023769m Mimulus guttatus mgf023769m N 0.752
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.752
Bra004501 Brassica rapa Bra004501 N 0.752
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.752
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.750
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.747
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.747
Cla014858 Citrullus lanatus Cla014858 N 0.747
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.747
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.747
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.743
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.743
MDP0000229742 Malus domestica MDP0000229742 N 0.743
Bo6g079210 Brassica oleracea Bo6g079210 N 0.743
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.743
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.743
Bra003482 Brassica rapa Bra003482 N 0.743
Bra040478 Brassica rapa Bra040478 I 0.743
Bo4g006900 Brassica oleracea Bo4g006900 N 0.743
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.741
TCM_022729 Theobroma cacao TCM_022729 N 0.737
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.733
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.733
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.733
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.733
Bra014415 Brassica rapa Bra014415 N 0.733
PK04952.1 Cannabis sativa PK04952.1 I 0.733
Bo4g197410 Brassica oleracea Bo4g197410 I 0.733
Traes_1BL_B8B4C1FB6 Triticum aestivum Traes_1BL_B8B4C1FB6 I 0.733
Traes_1BL_F14523046 Triticum aestivum Traes_1BL_F14523046 I 0.733
Traes_1BL_60A56C455 Triticum aestivum Traes_1BL_60A56C455 I 0.733
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.733
Bo3g039420 Brassica oleracea Bo3g039420 N 0.733
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.733
MLOC_38822 Hordeum vulgare MLOC_38822 I 0.733
SELMODRAFT_59317 Selaginella moellendorffii SELMODRAFT_59317 N 0.729
MLOC_56530 Hordeum vulgare MLOC_56530 N 0.727
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.727
OPUNC08G03290 Oryza punctata OPUNC08G03290 N 0.726
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.724
NGA2 Arabidopsis thaliana AT3G61970 N 0.723
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.723
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.723
Bo4g099000 Brassica oleracea Bo4g099000 N 0.723
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.723
Lus10004226.g Linum usitatissimum Lus10004226.g N 0.723
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.723
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.723
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.723
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.723
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.723
NGA1 Arabidopsis thaliana AT2G46870 N 0.723
Bra000434 Brassica rapa Bra000434 N 0.723
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.723
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.723
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.723
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.723
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.723
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.723
Ca_25633 Cicer arietinum Ca_25633 I 0.723
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.723
MDP0000138163 Malus domestica MDP0000138163 N 0.723
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.723
ONIVA08G03420 Oryza nivara ONIVA08G03420 N 0.719
ORUFI08G03850 Oryza rufipogon ORUFI08G03850 N 0.719
OS08G0157700 Oryza sativa OS08G0157700 N 0.719
OGLUM08G03520 Oryza glumaepatula OGLUM08G03520 N 0.719
ORGLA08G0028800 Oryza glaberrima ORGLA08G0028800 N 0.719
BGIOSGA028020 Oryza indica BGIOSGA028020 N 0.719
mgf018965m Mimulus guttatus mgf018965m N 0.717
BRADI4G42167 Brachypodium distachyon BRADI4G42167 N 0.717
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N 0.717
LPERR06G00460 Leersia perrieri LPERR06G00460 N 0.714
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.713
Bo8g097490 Brassica oleracea Bo8g097490 N 0.713
Lus10034276.g Linum usitatissimum Lus10034276.g I 0.713
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.713
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.713
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.713
mgf019085m Mimulus guttatus mgf019085m N 0.713
Bra007646 Brassica rapa Bra007646 N 0.713
GLYMA03G35700 Glycine max GLYMA03G35700 N 0.713
GLYMA19G38340 Glycine max GLYMA19G38340 N 0.713
30032.m000462 Ricinus communis 30032.m000462 N 0.713
OB05G32250 Oryza brachyantha OB05G32250 I 0.713
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.713
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.711
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.703
OBART11G03590 Oryza barthii OBART11G03590 N 0.703
OB12G13420 Oryza brachyantha OB12G13420 N 0.703
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.703
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.703
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.703
BGIOSGA034469 Oryza indica BGIOSGA034469 N 0.703
NGA3 Arabidopsis thaliana AT1G01030 N 0.703
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.703
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.703
POPTR_0006s22460 Populus trichocarpa POPTR_0006s22460 N 0.703
OPUNC07G09160 Oryza punctata OPUNC07G09160 N 0.703
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.703
ONIVA07G22860 Oryza nivara ONIVA07G22860 N 0.703
OGLUM11G03240 Oryza glumaepatula OGLUM11G03240 N 0.703
OLONG_005139 Oryza longistaminata OLONG_005139 N 0.703
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.703
OMERI11G03310 Oryza meridionalis OMERI11G03310 N 0.703
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.703
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.703
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.703
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.703
mgf023686m Mimulus guttatus mgf023686m I 0.703
ORUFI11G03500 Oryza rufipogon ORUFI11G03500 N 0.703
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.703
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.703
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.703
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.703
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.703
Eucgr.A02625 Eucalyptus grandis Eucgr.A02625 N 0.703
Bo9g176470 Brassica oleracea Bo9g176470 N 0.703
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.703
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.703
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.703
OPUNC11G03320 Oryza punctata OPUNC11G03320 N 0.703
ORGLA11G0033600 Oryza glaberrima ORGLA11G0033600 N 0.703
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.703
Ca_00826 Cicer arietinum Ca_00826 N 0.703
F775_20738 Aegilops tauschii F775_20738 I 0.703
OS11G0156000 Oryza sativa OS11G0156000 N 0.703
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.703
Bo5g002790 Brassica oleracea Bo5g002790 N 0.703
F775_21292 Aegilops tauschii F775_21292 I 0.702
GRMZM2G018336 Zea mays GRMZM2G018336 I 0.700
GRMZM2G065538 Zea mays GRMZM2G065538 I 0.700
GRMZM2G328742 Zea mays GRMZM2G328742 N 0.700