Bra007646 (Brassica rapa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bra007646 T018794_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra007646.1-P B3 22 126

Links

Other B3 family TFs
Other Brassica rapa TFs

211 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo8g097490 Brassica oleracea Bo8g097490 N 1.000
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.931
NGA2 Arabidopsis thaliana AT3G61970 N 0.911
Bo6g079210 Brassica oleracea Bo6g079210 N 0.911
Bra003482 Brassica rapa Bra003482 N 0.911
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.911
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.911
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.911
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.901
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.893
Bra014415 Brassica rapa Bra014415 N 0.891
Bo4g099000 Brassica oleracea Bo4g099000 N 0.881
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.881
TCM_015590 Theobroma cacao TCM_015590 I 0.871
Bra040478 Brassica rapa Bra040478 I 0.870
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.861
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.861
TCM_005014 Theobroma cacao TCM_005014 I 0.861
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.861
Pm024248 Prunus mume Pm024248 I 0.861
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.861
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.861
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.861
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.861
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.861
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.861
Bo4g197410 Brassica oleracea Bo4g197410 I 0.860
OPUNC04G20430 Oryza punctata OPUNC04G20430 I 0.851
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.851
30076.m004471 Ricinus communis 30076.m004471 I 0.851
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.851
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.851
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.851
MDP0000128295 Malus domestica MDP0000128295 N 0.851
PK11025.1 Cannabis sativa PK11025.1 I 0.851
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.848
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.843
NGA1 Arabidopsis thaliana AT2G46870 N 0.842
Bo4g006900 Brassica oleracea Bo4g006900 N 0.842
Bra000434 Brassica rapa Bra000434 N 0.842
Bra004501 Brassica rapa Bra004501 N 0.842
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.842
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.842
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.842
30068.m002615 Ricinus communis 30068.m002615 I 0.842
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.842
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.842
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.842
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.842
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.842
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.842
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.842
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.842
Bo3g039420 Brassica oleracea Bo3g039420 N 0.832
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.832
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.832
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.832
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.832
Pm028725 Prunus mume Pm028725 N 0.832
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.832
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.832
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.832
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.832
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.832
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.832
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.830
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.822
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.822
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.822
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.822
mgf023769m Mimulus guttatus mgf023769m N 0.822
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.822
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.822
MLOC_48938 Hordeum vulgare MLOC_48938 N 0.818
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.818
NGA3 Arabidopsis thaliana AT1G01030 N 0.812
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.812
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.812
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.812
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.812
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.812
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.812
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.812
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.812
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.812
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.812
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.812
PK21157.1 Cannabis sativa PK21157.1 I 0.812
Cla014858 Citrullus lanatus Cla014858 N 0.808
Cla005055 Citrullus lanatus Cla005055 N 0.806
Bo5g002790 Brassica oleracea Bo5g002790 N 0.802
Bra030497 Brassica rapa Bra030497 N 0.802
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.802
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.802
OB03G11610 Oryza brachyantha OB03G11610 N 0.802
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.802
Ca_01368 Cicer arietinum Ca_01368 I 0.802
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.800
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.798
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.792
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.792
Bo3g001110 Brassica oleracea Bo3g001110 N 0.792
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.792
OBART03G01650 Oryza barthii OBART03G01650 N 0.792
OBART04G22880 Oryza barthii OBART04G22880 I 0.792
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.792
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.792
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.792
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.792
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.792
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.792
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.792
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.792
OS03G0120900 Oryza sativa OS03G0120900 N 0.792
OS04G0581400 Oryza sativa OS04G0581400 I 0.792
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.792
Si036864m.g Setaria italica Si036864m.g N 0.792
Bra033294 Brassica rapa Bra033294 N 0.782
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.782
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.782
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.782
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.782
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.782
MDP0000138163 Malus domestica MDP0000138163 N 0.782
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.782
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.782
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.772
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.772
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.772
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.772
Si011823m.g Setaria italica Si011823m.g N 0.772
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.772
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.772
Cla006845 Citrullus lanatus Cla006845 I 0.772
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.772
MDP0000288808 Malus domestica MDP0000288808 N 0.772
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.772
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.772
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.762
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.762
OB02G35380 Oryza brachyantha OB02G35380 I 0.762
OB10G24100 Oryza brachyantha OB10G24100 N 0.756
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.752
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.752
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.752
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.752
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.747
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.743
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.743
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.743
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.743
OBART02G28100 Oryza barthii OBART02G28100 N 0.743
OBART10G17010 Oryza barthii OBART10G17010 N 0.743
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.743
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.743
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.743
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.743
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.743
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.743
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.743
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.743
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.743
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.743
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.743
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.743
OS02G0683500 Oryza sativa OS02G0683500 N 0.743
OS10G0537100 Oryza sativa OS10G0537100 N 0.743
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.743
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.743
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.743
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.733
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.733
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.733
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.733
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.733
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.732
TRIUR3_01515 Triticum urartu TRIUR3_01515 N 0.731
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.727
Bostr.7365s0004 Boechera stricta Bostr.7365s0004 I 0.725
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.724
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.723
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.723
Si020241m.g Setaria italica Si020241m.g N 0.723
Si039972m.g Setaria italica Si039972m.g N 0.723
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.723
mgf023686m Mimulus guttatus mgf023686m I 0.723
SELMODRAFT_59317 Selaginella moellendorffii SELMODRAFT_59317 N 0.718
NGA4 Arabidopsis lyrata scaffold_604140.1 I 0.717
TCM_022729 Theobroma cacao TCM_022729 N 0.717
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.714
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.714
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.713
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.713
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.713
TRIUR3_29732 Triticum urartu TRIUR3_29732 N 0.713
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.713
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.713
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.713
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.713
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.713
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.713
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.707
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.707
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.707
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.707
Bo3g064320 Brassica oleracea Bo3g064320 N 0.703
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.703
Ca_00826 Cicer arietinum Ca_00826 N 0.703
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.703
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.703
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.703