NGA4 (Arabidopsis lyrata)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 scaffold_604140.1 T021187_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NGA4
M06707_2.00 		Arabidopsis thaliana
NHHBDYCAGGTRNHWH
DWDNYACCTGRHVDDN		 Dap-seq
OMalley et al.(2016)
NGA4_col_a 		0.880 0.880
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_604140.1 B3 34 128

Links

Other B3 family TFs
Other Arabidopsis lyrata TFs

91 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.7365s0004 Boechera stricta Bostr.7365s0004 I 0.890
NGA4 Arabidopsis thaliana AT4G01500 D 0.880
Bra008552 Brassica rapa Bra008552 I 0.880
Thhalv10028783m.g Eutrema salsugineum Thhalv10028783m.g I 0.859
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.857
Bo00853s090 Brassica oleracea Bo00853s090 I 0.853
Cagra.23502s0003 Capsella grandiflora Cagra.23502s0003 I 0.848
Carubv10001406m.g Capsella rubella Carubv10001406m.g I 0.848
OPUNC04G20430 Oryza punctata OPUNC04G20430 I 0.770
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.764
NGA3 Arabidopsis thaliana AT1G01030 N 0.761
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.761
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.761
Ca_01368 Cicer arietinum Ca_01368 I 0.761
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.761
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.761
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.761
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.761
Bo3g001110 Brassica oleracea Bo3g001110 N 0.750
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.750
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.750
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.750
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.743
Bra037417 Brassica rapa Bra037417 N 0.742
Bo9g004050 Brassica oleracea Bo9g004050 N 0.739
Bra033294 Brassica rapa Bra033294 N 0.739
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.739
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.739
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.739
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.739
TCM_005014 Theobroma cacao TCM_005014 I 0.739
Pm024248 Prunus mume Pm024248 I 0.739
30076.m004471 Ricinus communis 30076.m004471 I 0.739
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.739
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.739
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.739
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.739
MDP0000288808 Malus domestica MDP0000288808 N 0.739
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.739
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.728
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.728
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.728
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.728
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.728
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.728
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.728
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.728
OB03G11610 Oryza brachyantha OB03G11610 N 0.728
OBART04G22880 Oryza barthii OBART04G22880 I 0.728
OBART10G17010 Oryza barthii OBART10G17010 N 0.728
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.728
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.728
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.728
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.728
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.728
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.728
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.728
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.728
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.728
OS04G0581400 Oryza sativa OS04G0581400 I 0.728
OS10G0537100 Oryza sativa OS10G0537100 N 0.728
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.728
Si036864m.g Setaria italica Si036864m.g N 0.728
TCM_015590 Theobroma cacao TCM_015590 I 0.728
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.728
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.728
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.728
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.728
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.728
PK21157.1 Cannabis sativa PK21157.1 I 0.728
Bo8g097490 Brassica oleracea Bo8g097490 N 0.717
Bra007646 Brassica rapa Bra007646 N 0.717
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.717
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.717
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.717
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.717
Bo4g099000 Brassica oleracea Bo4g099000 N 0.707
Bo4g197410 Brassica oleracea Bo4g197410 I 0.707
Bra000434 Brassica rapa Bra000434 N 0.707
Bra040478 Brassica rapa Bra040478 I 0.707
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.707
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.707
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.707
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.707
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.707
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.707
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.707
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.707
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.707
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.707
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.705