CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra009171
(
Brassica rapa
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02362 (B3)
IPR003340
Bra009171
T018800_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra009171.1-P
B3
45
118
FEKTLTPSDVGKLNRLVIPKQHAEKYFPLNAISNNADASTEKGMLLSFEDELGKSWRFRRGQGSSSAVANPTSY
Links
Other
B3
family TFs
Other
Brassica rapa
TFs
47 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Traes_2DL_896E50180
Triticum aestivum
Traes_2DL_896E50180
I
0.821
AT5G06250
Arabidopsis thaliana
AT5G06250
N
0.810
fgenesh2_kg.6__566__AT5G06250.2
Arabidopsis lyrata
fgenesh2_kg.6__566__AT5G06250.2
N
0.810
PGSC0003DMG400008936
Solanum tuberosum
PGSC0003DMG400008936
N
0.810
Thhalv10021305m.g
Eutrema salsugineum
Thhalv10021305m.g
N
0.793
Bo5g136360
Brassica oleracea
Bo5g136360
N
0.776
Bra005886
Brassica rapa
Bra005886
N
0.776
SapurV1A.0974s0140
Salix purpurea
SapurV1A.0974s0140
N
0.776
SapurV1A.1586s0010
Salix purpurea
SapurV1A.1586s0010
N
0.776
MLOC_48938
Hordeum vulgare
MLOC_48938
N
0.773
GLYMA02G36090
Glycine max
GLYMA02G36090
I
0.759
GLYMA03G35700
Glycine max
GLYMA03G35700
N
0.759
OMERI12G01740
Oryza meridionalis
OMERI12G01740
N
0.759
PGSC0003DMG400028159
Solanum tuberosum
PGSC0003DMG400028159
N
0.759
Solyc10g083210.1
Solanum lycopersicum
Solyc10g083210.1
N
0.759
Cucsa.241440
Cucumis sativus
Cucsa.241440
I
0.759
Bra017262
Brassica rapa
Bra017262
N
0.741
GSMUA_Achr6G13140_001
Musa acuminata
GSMUA_Achr6G13140_001
N
0.741
OB03G11610
Oryza brachyantha
OB03G11610
N
0.741
Ca_25633
Cicer arietinum
Ca_25633
I
0.741
gene15627-v1.0-hybrid
Fragaria vesca
gene15627-v1.0-hybrid
I
0.741
Lus10021326.g
Linum usitatissimum
Lus10021326.g
N
0.741
PK04952.1
Cannabis sativa
PK04952.1
I
0.741
BGIOSGA014498
Oryza indica
BGIOSGA014498
I
0.724
BRADI4G25170
Brachypodium distachyon
BRADI4G25170
N
0.724
GLYMA19G45090
Glycine max
GLYMA19G45090
I
0.724
GSMUA_Achr9G02600_001
Musa acuminata
GSMUA_Achr9G02600_001
I
0.724
LPERR04G18630
Leersia perrieri
LPERR04G18630
N
0.724
OB04G29740
Oryza brachyantha
OB04G29740
I
0.724
ONIVA04G22030
Oryza nivara
ONIVA04G22030
I
0.724
ORUFI04G24570
Oryza rufipogon
ORUFI04G24570
I
0.724
Si036864m.g
Setaria italica
Si036864m.g
N
0.724
Traes_4DL_A83084AC1
Triticum aestivum
Traes_4DL_A83084AC1
N
0.724
Gorai.001G150200
Gossypium raimondii
Gorai.001G150200
I
0.724
SapurV1A.1211s0020
Salix purpurea
SapurV1A.1211s0020
N
0.724
MTR_8g023990
Medicago truncatula
MTR_8g023990
I
0.707
OB01G12610
Oryza brachyantha
OB01G12610
I
0.707
Traes_5BL_B98E347A8
Triticum aestivum
Traes_5BL_B98E347A8
N
0.707
Traes_5DL_CACDF70D6
Triticum aestivum
Traes_5DL_CACDF70D6
N
0.707
30076.m004471
Ricinus communis
30076.m004471
I
0.707
Bostr.25993s0080
Boechera stricta
Bostr.25993s0080
N
0.707
evm.TU.supercontig_57.71
Carica papaya
evm.TU.supercontig_57.71
I
0.707
Gorai.007G114200
Gossypium raimondii
Gorai.007G114200
I
0.707
Gorai.008G132400
Gossypium raimondii
Gorai.008G132400
I
0.707
Pavir.Ia04549
Panicum virgatum
Pavir.Ia04549
N
0.707
Pavir.Ib00059
Panicum virgatum
Pavir.Ib00059
N
0.707
OLONG_010584
Oryza longistaminata
OLONG_010584
I
0.702