OB04G29740 (Oryza brachyantha)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 OB04G29740 T019918_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.750 0.750
NGA4
M06707_2.00 		Arabidopsis thaliana
NHHBDYCAGGTRNHWH
DWDNYACCTGRHVDDN		 Dap-seq
OMalley et al.(2016)
NGA4_col_a 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB04G29740.1 B3 112 186

Links

Other B3 family TFs
Other Oryza brachyantha TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OB03G11610 Oryza brachyantha OB03G11610 N 0.931
Si036864m.g Setaria italica Si036864m.g N 0.931
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.929
OPUNC04G20430 Oryza punctata OPUNC04G20430 I 0.919
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.917
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.917
TCM_015590 Theobroma cacao TCM_015590 I 0.903
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.900
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.889
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.889
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.889
NGA1 Arabidopsis thaliana AT2G46870 N 0.875
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.875
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.875
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.875
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.875
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.875
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.875
MLOC_48938 Hordeum vulgare MLOC_48938 N 0.864
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.847
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.833
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.819
F775_04153 Aegilops tauschii F775_04153 N 0.819
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.819
OBART10G17010 Oryza barthii OBART10G17010 N 0.819
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.819
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.819
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.819
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.819
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.819
OS10G0537100 Oryza sativa OS10G0537100 N 0.819
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.819
OBART02G28110 Oryza barthii OBART02G28110 N 0.811
MDP0000128295 Malus domestica MDP0000128295 N 0.809
Bra005886 Brassica rapa Bra005886 N 0.792
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.792
GSMUA_Achr9G02600_001 Musa acuminata GSMUA_Achr9G02600_001 I 0.778
OPUNC07G09160 Oryza punctata OPUNC07G09160 N 0.778
Ca_25633 Cicer arietinum Ca_25633 I 0.778
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.778
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.778
GLYMA03G35700 Glycine max GLYMA03G35700 N 0.764
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.764
OB01G12610 Oryza brachyantha OB01G12610 I 0.764
PGSC0003DMG400028159 Solanum tuberosum PGSC0003DMG400028159 N 0.764
Solyc10g083210.1 Solanum lycopersicum Solyc10g083210.1 N 0.764
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.764
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.764
PK04952.1 Cannabis sativa PK04952.1 I 0.764
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.758
OB10G24100 Oryza brachyantha OB10G24100 N 0.756
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.753
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.750
OLONG_010584 Oryza longistaminata OLONG_010584 I 0.745
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.743
OMERI08G03480 Oryza meridionalis OMERI08G03480 N 0.736
Carubv10001406m.g Capsella rubella Carubv10001406m.g I 0.736
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.736
Bra009171 Brassica rapa Bra009171 N 0.724
BRADI4G25170 Brachypodium distachyon BRADI4G25170 N 0.722
GRMZM5G805685 Zea mays GRMZM5G805685 N 0.722
Traes_3AS_2E5380A2A Triticum aestivum Traes_3AS_2E5380A2A I 0.722
Pavir.Fa01903 Panicum virgatum Pavir.Fa01903 N 0.716
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.705
AC216872.3_FG002 Zea mays AC216872.3_FG002 N 0.700