NEMVEDRAFT_v1g104083 (Nematostella vectensis)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 NEMVEDRAFT_v1g104083 T165025_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NEMVEDRAFT_v1g104083
M01207_2.00		 Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		0.818 0.818
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		0.818 0.818
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		0.818 0.818
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		0.818 0.818
cey-1
M01903_2.00 		Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN		 PBM
Weirauch et al.(2014)
pTH8991 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01207_2.00 CSD 8 77

DNA Binding Domains

Protein ID Domain From To Sequence
EDO41469 CSD 8 77

Links

Other CSD family TFs
Other Nematostella vectensis TFs

311 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTERF1 Arabidopsis thaliana AT2G03050 N
Bo7g080880 Brassica oleracea Bo7g080880 N
Bostr.0556s0118 Boechera stricta Bostr.0556s0118 N
Bra024793 Brassica rapa Bra024793 N
Cagra.0534s0010 Capsella grandiflora Cagra.0534s0010 N
Carubv10019265m.g Capsella rubella Carubv10019265m.g N
Thhalv10004730m.g Eutrema salsugineum Thhalv10004730m.g N