RSKR_0000861200 (Rhabditophanes kr3021)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 RSKR_0000861200 T165876_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
cey-1
M01903_2.00 		Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN		 PBM
Weirauch et al.(2014)
pTH8991 		0.742 0.742
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		0.742 0.742
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		0.742 0.742
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		0.742 0.742
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		0.742 0.742
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0000861200.1 CSD 69 138

Links

Other CSD family TFs
Other Rhabditophanes kr3021 TFs

246 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAH42217 Xenopus laevis AAH42217 I 0.742
AAI30161 Xenopus laevis AAI30161 I 0.742
Aan_R001440 Calypte anna Aan_R001440 I 0.742
Aan_R014295 Calypte anna Aan_R014295 I 0.742
ACAC_0000909201 Angiostrongylus cantonensis ACAC_0000909201 I 0.727
ACOC_0000576201 Angiostrongylus costaricensis ACOC_0000576201 I 0.727
ACYPI003867 Acyrthosiphon pisum ACYPI003867 I 0.727
Afo_R006672 Aptenodytes forsteri Afo_R006672 I 0.708
Afo_R014263 Aptenodytes forsteri Afo_R014263 I 0.742
Alligator_sinensis_CCG005029.1 Alligator sinensis Alligator_sinensis_CCG005029.1 I 0.742
Alligator_sinensis_CCG014301.1 Alligator sinensis Alligator_sinensis_CCG014301.1 I 0.718
ALUE_0000394301 Ascaris lumbricoides ALUE_0000394301 I 0.773
ANCCAN_14498 Ancylostoma caninum ANCCAN_14498 I 0.727
ANCCEY_03875 Ancylostoma ceylanicum ANCCEY_03875 I 0.727
ANCDUO_02786 Ancylostoma duodenale ANCDUO_02786 I 0.727
ASIM_0001243501 Anisakis simplex ASIM_0001243501 I 0.773
ASU_11432 Ascaris suum ASU_11432 I 0.773
BGLB002206 Biomphalaria glabrata BGLB002206 I 0.742
Bm3781 Brugia malayi Bm3781 I 0.773
Brh_R007443 Buceros rhinoceros Brh_R007443 I 0.742
Brh_R010004 Buceros rhinoceros Brh_R010004 I 0.708
CAA42778 Xenopus laevis CAA42778 I 0.742
CapteG166603 Capitella teleta CapteG166603 I 0.742
CBG02981 Caenorhabditis briggsae CBG02981 I 0.727
CBN16711 Caenorhabditis brenneri CBN16711 I 0.742
CGI_10014112 Crassostrea gigas CGI_10014112 I 0.758
CJA05984 Caenorhabditis japonica CJA05984 I 0.712
CLEC013417 Cimex lectularius CLEC013417 I 0.750
Cmyd_10002115 Chelonia mydas Cmyd_10002115 I 0.750
Cmyd_10003103 Chelonia mydas Cmyd_10003103 I 0.730
CRE01789 Caenorhabditis remanei CRE01789 I 0.742
D917_04190 Trichinella nativa D917_04190 I 0.758
D918_04890 Trichuris suis D918_04890 I 0.773
DAPPUDRAFT_311200 Daphnia pulex DAPPUDRAFT_311200 I 0.712
DICVIV_10680 Dictyocaulus viviparus DICVIV_10680 I 0.727
DME_0000984901 Dracunculus medinensis DME_0000984901 I 0.773
EEL_0000726801 Elaeophora elaphi EEL_0000726801 I 0.773
ENSAMEG00000000494 Ailuropoda melanoleuca ENSAMEG00000000494 I 0.742
ENSAMEG00000009393 Ailuropoda melanoleuca ENSAMEG00000009393 I 0.742
ENSAMEG00000016564 Ailuropoda melanoleuca ENSAMEG00000016564 I 0.742
ENSAMXG00000007090 Astyanax mexicanus ENSAMXG00000007090 I 0.727
ENSAMXG00000014478 Astyanax mexicanus ENSAMXG00000014478 I 0.742
ENSAPLG00000003147 Anas platyrhynchos ENSAPLG00000003147 I 0.742
ENSAPLG00000004899 Anas platyrhynchos ENSAPLG00000004899 I 0.712
YBX2 Bos taurus ENSBTAG00000009126 I 0.742
YBX3 Bos taurus ENSBTAG00000009663 I 0.742
YBX1 Bos taurus ENSBTAG00000017368 I 0.742
ENSBTAP00000012735-D1 Bos grunniens ENSBTAP00000012735-D1 I 0.742
YBX1 Canis familiaris ENSCAFG00000002541 I 0.742
YBX3 Canis familiaris ENSCAFG00000013401 I 0.742
ENSCAFG00000016128 Canis familiaris ENSCAFG00000016128 I 0.742
ENSCAFG00000017286 Canis familiaris ENSCAFG00000017286 I 0.727
YBX3 Choloepus hoffmanni ENSCHOG00000011988 I 0.742
ENSCING00000010654 Ciona intestinalis ENSCING00000010654 I 0.727
ENSCJAG00000003155 Callithrix jacchus ENSCJAG00000003155 I 0.742
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.727
YBX2 Callithrix jacchus ENSCJAG00000016581 I 0.742
ENSCJAG00000021660 Callithrix jacchus ENSCJAG00000021660 I 0.742
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.712
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.729
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.742
YBX1 Cavia porcellus ENSCPOG00000010888 I 0.742
YBX3 Cavia porcellus ENSCPOG00000011329 I 0.742
ENSCSAG00000008744 Chlorocebus sabaeus ENSCSAG00000008744 I 0.742
ENSCSAG00000011857 Chlorocebus sabaeus ENSCSAG00000011857 I 0.742
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.742
ybx1 Danio rerio ENSDARG00000004757 I 0.742
YBX2 Dasypus novemcinctus ENSDNOG00000013746 I 0.742
Ybx3 Dipodomys ordii ENSDORG00000009103 I 0.742
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.742
YBX2 Equus caballus ENSECAG00000009996 I 0.742
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.742
YBX3 Equus caballus ENSECAG00000013777 I 0.742
ENSECAG00000023592 Equus caballus ENSECAG00000023592 I 0.742
YBX1 Erinaceus europaeus ENSEEUG00000005657 I 0.742
YBX3 Erinaceus europaeus ENSEEUG00000010415 I 0.742
YBX3 Echinops telfairi ENSETEG00000002557 I 0.742
ENSFALG00000003661 Ficedula albicollis ENSFALG00000003661 I 0.742
YBX2 Felis catus ENSFCAG00000018097 I 0.742
ENSFCAG00000022604 Felis catus ENSFCAG00000022604 I 0.708
YBX3 Felis catus ENSFCAG00000027748 I 0.742
YBX2 Homo sapiens ENSG00000006047 I 0.727
YBX3 Homo sapiens ENSG00000060138 I 0.742
YBX1 Homo sapiens ENSG00000065978 D 0.742
ybx1 Gasterosteus aculeatus ENSGACG00000006447 I 0.742
YBX2 Gasterosteus aculeatus ENSGACG00000019392 I 0.712
YBX1 Gallus gallus ENSGALG00000004848 I 0.742
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.742
YBX3 Gorilla gorilla ENSGGOG00000001352 I 0.742
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.727
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.712
ENSGMOG00000007765 Gadus morhua ENSGMOG00000007765 I 0.712
ENSGMOG00000015216 Gadus morhua ENSGMOG00000015216 I 0.712
ENSLACG00000018135 Latimeria chalumnae ENSLACG00000018135 I 0.742
ENSLAFG00000007597 Loxodonta africana ENSLAFG00000007597 I 0.742
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.742
YBX3 Loxodonta africana ENSLAFG00000017247 I 0.742
YBX1 Loxodonta africana ENSLAFG00000031170 I 0.744
ENSLOCG00000002530 Lepisosteus oculatus ENSLOCG00000002530 I 0.742
ENSLOCG00000013819 Lepisosteus oculatus ENSLOCG00000013819 I 0.727
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.742
YBX3 Meleagris gallopavo ENSMGAG00000014224 I 0.742
YBX2 Microcebus murinus ENSMICG00000012453 I 0.702
ENSMICG00000014984 Microcebus murinus ENSMICG00000014984 I 0.742
YBX3 Myotis lucifugus ENSMLUG00000007476 I 0.714
ENSMLUG00000029452 Myotis lucifugus ENSMLUG00000029452 I 0.725
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.742
YBX3 Macaca mulatta ENSMMUG00000022469 I 0.742
ENSMMUG00000022712 Macaca mulatta ENSMMUG00000022712 I 0.742
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.754
ENSMMUP00000017257 Macaca fascicularis ENSMMUP00000017257 I 0.727
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.742
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.727
YBX3 Monodelphis domestica ENSMODG00000018248 I 0.742
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.727
Ybx2 Mus musculus ENSMUSG00000018554 I 0.742
Ybx1 Mus musculus ENSMUSG00000028639 I 0.742
Ybx3 Mus musculus ENSMUSG00000030189 I 0.742
ENSNLEG00000008063 Nomascus leucogenys ENSNLEG00000008063 I 0.742
ENSNLEG00000012324 Nomascus leucogenys ENSNLEG00000012324 I 0.742
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.742
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.742
ENSOARG00000011562 Ovis aries ENSOARG00000011562 I 0.742
ENSOARG00000020447 Ovis aries ENSOARG00000020447 I 0.742
ENSOARG00000020919 Ovis aries ENSOARG00000020919 I 0.742
ENSOCUG00000021258 Oryctolagus cuniculus ENSOCUG00000021258 I 0.707
ENSOCUG00000024588 Oryctolagus cuniculus ENSOCUG00000024588 I 0.725
ENSOCUG00000026608 Oryctolagus cuniculus ENSOCUG00000026608 I 0.700
ENSOCUG00000028047 Oryctolagus cuniculus ENSOCUG00000028047 I 0.708
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.742
YBX1 Otolemur garnettii ENSOGAG00000006784 I 0.742
YBX3 Otolemur garnettii ENSOGAG00000013245 I 0.712
ENSONIG00000002062 Oreochromis niloticus ENSONIG00000002062 I 0.742
ENSONIG00000018954 Oreochromis niloticus ENSONIG00000018954 I 0.712
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.742
ybx1 Oryzias latipes ENSORLG00000004225 I 0.742
ENSORLG00000006269 Oryzias latipes ENSORLG00000006269 I 0.712
ENSP00000007699-D1 Bos grunniens ENSP00000007699-D1 I 0.742
ENSP00000228251 Macaca fascicularis ENSP00000228251 I 0.742
ENSPANG00000005177 Papio anubis ENSPANG00000005177 I 0.723
ENSPANG00000010280 Papio anubis ENSPANG00000010280 I 0.742
ENSPANG00000013156 Papio anubis ENSPANG00000013156 I 0.742
ENSPANG00000016576 Papio anubis ENSPANG00000016576 I 0.742
ENSPANG00000019627 Papio anubis ENSPANG00000019627 I 0.712
ENSPANG00000024250 Papio anubis ENSPANG00000024250 I 0.742
YBX3 Procavia capensis ENSPCAG00000001397 I 0.754
YBX2 Procavia capensis ENSPCAG00000008019 I 0.742
ENSPFOG00000007181 Poecilia formosa ENSPFOG00000007181 I 0.712
ENSPFOG00000011441 Poecilia formosa ENSPFOG00000011441 I 0.742
ENSPPYG00000004279 Pongo abelii ENSPPYG00000004279 I 0.742
ENSPSIG00000009247 Pelodiscus sinensis ENSPSIG00000009247 I 0.742
ENSPSIG00000011017 Pelodiscus sinensis ENSPSIG00000011017 I 0.742
ENSPSIG00000012364 Pelodiscus sinensis ENSPSIG00000012364 I 0.742
YBX3 Pan troglodytes ENSPTRG00000004681 I 0.700
YBX1 Pan troglodytes ENSPTRG00000006456 I 0.712
YBX2 Pan troglodytes ENSPTRG00000008673 I 0.727
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.742
YBX3 Pteropus vampyrus ENSPVAG00000006740 I 0.742
Ybx3 Rattus norvegicus ENSRNOG00000005480 I 0.742
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.742
Ybx1 Rattus norvegicus ENSRNOG00000023786 I 0.742
YBX2 Sorex araneus ENSSARG00000000488 I 0.727
ENSSHAG00000003262 Sarcophilus harrisii ENSSHAG00000003262 I 0.742
ENSSHAG00000011350 Sarcophilus harrisii ENSSHAG00000011350 I 0.738
ENSSHAG00000014452 Sarcophilus harrisii ENSSHAG00000014452 I 0.742
YBX3 Sus scrofa ENSSSCG00000000633 I 0.742
YBX2 Sus scrofa ENSSSCG00000017938 I 0.742
ENSSSCG00000030357 Sus scrofa ENSSSCG00000030357 I 0.742
ENSSTOG00000002108 Ictidomys tridecemlineatus ENSSTOG00000002108 I 0.714
ENSSTOG00000008630 Ictidomys tridecemlineatus ENSSTOG00000008630 I 0.742
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.742
YBX3 Tupaia belangeri ENSTBEG00000012570 I 0.742
YBX3 Taeniopygia guttata ENSTGUG00000012047 I 0.742
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.742
YBX2 Tetraodon nigroviridis ENSTNIG00000010139 I 0.712
ybx1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.742
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.712
ybx1 Takifugu rubripes ENSTRUG00000015333 I 0.742
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.729
YBX3 Tursiops truncatus ENSTTRG00000008045 I 0.702
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.742
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.702
ENSXMAG00000015755 Xiphophorus maculatus ENSXMAG00000015755 I 0.712
ENSXMAG00000018674 Xiphophorus maculatus ENSXMAG00000018674 I 0.742
EVEC_0000436301 Enterobius vermicularis EVEC_0000436301 I 0.742
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.727
genemark-nMf.1.1.scaf00296-processed-gene-0.4 Meloidogyne floridensis genemark-nMf.1.1.scaf00296-processed-gene-0.4 I 0.727
Gfo_R007354 Geospiza fortis Gfo_R007354 I 0.742
Gfo_R009480 Geospiza fortis Gfo_R009480 I 0.708
GPUH_0001124501 Gongylonema pulchrum GPUH_0001124501 I 0.773
Hba_02103 Heterorhabditis bacteriophora Hba_02103 I 0.742
HCOI01877200 Haemonchus contortus HCOI01877200 I 0.727
HelroG133388 Helobdella robusta HelroG133388 I 0.742
HPBE_0000695301 Heligmosomoides bakeri HPBE_0000695301 I 0.727
HPLM_0000375501 Haemonchus placei HPLM_0000375501 I 0.727
Hsal_07052--XP_393344.3_APIME Harpegnathos saltator Hsal_07052--XP_393344.3_APIME I 0.712
ISCW005281 Ixodes scapularis ISCW005281 I 0.712
L889_g15794 Steinernema feltiae L889_g15794 I 0.712
L893_g29692 Steinernema glaseri L893_g29692 I 0.712
LOAG_17966 Loa loa LOAG_17966 I 0.773
LotgiG78612 Lottia gigantea LotgiG78612 I 0.742
MhA1_Contig2458.frz3.gene1 Meloidogyne hapla MhA1_Contig2458.frz3.gene1 I 0.727
Minc12652 Meloidogyne incognita Minc12652 I 0.727
nAv.1.0.1.g07732 Acanthocheilonema viteae nAv.1.0.1.g07732 I 0.773
NBR_0000795701 Nippostrongylus brasiliensis NBR_0000795701 I 0.727
nDi.2.2.2.g07679 Dirofilaria immitis nDi.2.2.2.g07679 I 0.773
NECAME_15956 Necator americanus NECAME_15956 I 0.727
NEMVEDRAFT_v1g104083 Nematostella vectensis NEMVEDRAFT_v1g104083 D 0.727
nLs.2.1.2.g03745 Litomosoides sigmodontis nLs.2.1.2.g03745 I 0.773
nOo.2.0.1.g01690 Onchocerca ochengi nOo.2.0.1.g01690 I 0.773
nRc.2.0.1.g10725 Romanomermis culicivorax nRc.2.0.1.g10725 I 0.727
Ocbimv22002282m.g Octopus bimaculoides Ocbimv22002282m.g I 0.727
OESDEN_18169 Oesophagostomum dentatum OESDEN_18169 I 0.727
Ogr10632 Ophisaurus gracilis Ogr10632 I 0.742
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.758
PTRK_0000206200 Parastrongyloides trichosuri PTRK_0000206200 I 0.833
PTRK_0000574400 Parastrongyloides trichosuri PTRK_0000574400 I 0.712
Pvit_10025 Pogona vitticeps Pvit_10025 I 0.742
Sakowv30002198m.g Saccoglossus kowalevskii Sakowv30002198m.g I 0.758
SMU15014702 Schmidtea mediterranea SMU15014702 I 0.742
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.712
SPAL_0000982100 Strongyloides papillosus SPAL_0000982100 I 0.727
SPAL_0001184400 Strongyloides papillosus SPAL_0001184400 I 0.803
SSTP_0000685800 Strongyloides stercoralis SSTP_0000685800 I 0.727
SSTP_0000859700 Strongyloides stercoralis SSTP_0000859700 I 0.803
SVE_0106400 Strongyloides venezuelensis SVE_0106400 I 0.803
SVE_1573400 Strongyloides venezuelensis SVE_1573400 I 0.727
SVUK_0001307901 Strongylus vulgaris SVUK_0001307901 I 0.727
Tal_R003478 Tyto alba Tal_R003478 I 0.730
Tal_R011198 Tyto alba Tal_R011198 I 0.708
TCLT_0000736301 Thelazia callipaeda TCLT_0000736301 I 0.769
TCNE_0001642201 Toxocara canis TCNE_0001642201 I 0.773
TELCIR_06115 Teladorsagia circumcincta TELCIR_06115 I 0.727
TMUE_s0011007500 Trichuris muris TMUE_s0011007500 I 0.742
TTRE_0000405201 Trichuris trichiura TTRE_0000405201 I 0.773
cey-1 Caenorhabditis elegans WBGene00000472 D 0.742
WBGene00247949 Onchocerca volvulus WBGene00247949 I 0.758
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.773
ybx3 Xenopus tropicalis XB-GENE-1007558 I 0.727
ybx1 Xenopus tropicalis XB-GENE-480746 I 0.742
ybx2 Xenopus tropicalis XB-GENE-5798907 I 0.742
ybx2.L Xenopus laevis XB-GENE-6252609 I 0.742
ybx2.S Xenopus laevis XB-GENE-6254213 I 0.742
ybx1.S Xenopus laevis XB-GENE-865405 I 0.742
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.712
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.712