Cmyd_10010997 (Chelonia mydas)
CSL

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF09271 (LAG1-DNAbind) IPR015351 Cmyd_10010997 T166298_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RBPJ
M00735_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig2 		1.000 1.000
RBPJ
M00736_2.00 		Homo sapiens
NNNYTCHCAN
NTGDGARNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig4 		1.000 1.000
RBPJ
M00737_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL-NOTCH1 		1.000 1.000
RBPJ
M00738_2.00 		Homo sapiens
NBTCHCAN
NTGDGAVN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His_MAML1 		1.000 1.000
RBPJ
M00739_2.00 		Homo sapiens
NNBTCHCAN
NTGDGAVNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His 		1.000 1.000
RBPJ
M00740_2.00 		Homo sapiens
NNNYTCYCAN
NTGRGARNNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_Fig2 		1.000 1.000
RBPJ
M00741_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig2 		1.000 1.000
RBPJ
M00742_2.00 		Homo sapiens
NDYTCHCAB
VTGDGARHN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig5 		1.000 1.000
RBPJ
M08105_2.00 		Homo sapiens
NNTTCCCABN
NVTGGGAANN		 ChIP-seq
Mathelier et al.(2014)
MA1116.1 		1.000 1.000
RBPJ
M09020_2.00 		Homo sapiens
BTTCCCASVVN
NBBSTGGGAAV		 Misc
Kulakovskiy et al.(2013)
SUH_HUMAN.H11MO.0.A 		1.000 1.000
Rbpj
M09021_2.00 		Mus musculus
NBTTCCCASVV
BBSTGGGAAVN		 Misc
Kulakovskiy et al.(2013)
SUH_MOUSE.H11MO.0.A 		1.000 1.000
RBPJ
M10413_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_01 		1.000 1.000
RBPJ
M10414_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_Q4 		1.000 1.000
Su(H)
M10415_2.00 		Drosophila melanogaster
VGKTTCYCACRVY
RBYGTGRGAAMCB		 Transfac
Matys et al.(2006)
I$SUH_01 		0.794 0.794
Su(H)
M08455_2.00 		Drosophila melanogaster
HBHNVGKTTCYCACRV
BYGTGRGAAMCBNDVD		 COMPILED
Mathelier et al.(2014)
MA0085.1 		0.794 0.794
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10010997 CSL 58 188

Links

Other CSL family TFs
Other Chelonia mydas TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_18250 Ancylostoma caninum ANCCAN_18250 N
ANCCEY_02118 Ancylostoma ceylanicum ANCCEY_02118 N
ANCDUO_05680 Ancylostoma duodenale ANCDUO_05680 N
augustus_masked-nMf.1.1.scaf33168-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf33168-processed-gene-0.0 I 0.824
BGLB010819 Biomphalaria glabrata BGLB010819 I
BTMF_0000429201 Brugia timori BTMF_0000429201 I 0.762
BTMF_0000608501 Brugia timori BTMF_0000608501 I
CGOC_0000554601 Cylicostephanus goldi CGOC_0000554601 N
D915_08967 Fasciola hepatica D915_08967 I 0.833
DICVIV_03671 Dictyocaulus viviparus DICVIV_03671 N
RBPJ Homo sapiens ENSG00000168214 D 1.000
ENSVPAG00000005031 Vicugna pacos ENSVPAG00000005031 I 0.944
GPLIN_001569000 Globodera pallida GPLIN_001569000 I 0.765
HCOI00218000 Haemonchus contortus HCOI00218000 N
HCOI01422600 Haemonchus contortus HCOI01422600 N
HPLM_0000748001 Haemonchus placei HPLM_0000748001 N
NBR_0000281601 Nippostrongylus brasiliensis NBR_0000281601 N
NBR_0002014201 Nippostrongylus brasiliensis NBR_0002014201 N
NECAME_17145 Necator americanus NECAME_17145 I 0.714
NECAME_18743 Necator americanus NECAME_18743 N
OESDEN_00868 Oesophagostomum dentatum OESDEN_00868 N
scaffold595-EXSNAP2012.9 Pristionchus exspectatus scaffold595-EXSNAP2012.9 I 0.714
SCUD_0000326701 Schistosoma curassoni SCUD_0000326701 I 0.833
Sjc_0108400 Schistosoma japonicum Sjc_0108400 I 0.833
SMRZ_0000802101 Schistosoma margrebowiei SMRZ_0000802101 I 0.833
SMTD_0001089601 Schistosoma mattheei SMTD_0001089601 I 0.833
SMUV_0001013801 Syphacia muris SMUV_0001013801 I 0.727
SVUK_0001898701 Strongylus vulgaris SVUK_0001898701 N
TRE_0000568701 Trichobilharzia regenti TRE_0000568701 I 0.833