kdm2b (Xenopus tropicalis)
CxxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02008 (zf-CXXC) IPR002857 XB-GENE-990506 T168706_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KDM2B
M01911_2.00 		Homo sapiens
NNNNNNCGN
NCGNNNNNN		 PBM
Weirauch et al.(2014)
pTH9191 		1.000 1.000
kdm2ba
M01909_2.00 		Danio rerio
NNNNCGN
NCGNNNN		 PBM
Weirauch et al.(2014)
pTH8577 		0.979 0.979
FBXL19
M01916_2.00 		Tetraodon nigroviridis
NNNNCGNN
NNCGNNNN		 PBM
Weirauch et al.(2014)
pTH8570 		0.894 0.894
A6H8I1_DANRE
M01906_2.00 		Danio rerio
CGTACGYA
TRCGTACG		 PBM
Weirauch et al.(2014)
pTH9257 		0.851 0.851
KDM2A
M01915_2.00 		Meleagris gallopavo
NNNNYRNNNN
NNNNYRNNNN		 PBM
Weirauch et al.(2014)
pTH9212 		0.809 0.809
BGIBMGA012843
M01907_2.00 		Bombyx mori
NNCGCGTANVNN
NNBNTACGCGNN		 PBM
Weirauch et al.(2014)
pTH9239 		0.766 0.766
kdm2aa
M01910_2.00 		Danio rerio
NCGNNNNNN
NNNNNNCGN		 PBM
Weirauch et al.(2014)
pTH8585 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH76965 CxxC 45 91
AAI54095 CxxC 566 612

Links

Other CxxC family TFs
Other Xenopus tropicalis TFs

249 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29703.m001536 Ricinus communis 29703.m001536 N
AMTR_s00025p00060270 Amborella trichopoda AMTR_s00025p00060270 N
Aquca_026_00063 Aquilegia coerulea Aquca_026_00063 N
MTERF4 Arabidopsis thaliana AT4G02990 N
Bo9g006180 Brassica oleracea Bo9g006180 N
Bostr.2983s0143 Boechera stricta Bostr.2983s0143 N
Bra036228 Brassica rapa Bra036228 N
Cagra.2552s0028 Capsella grandiflora Cagra.2552s0028 N
Carubv10003638m.g Capsella rubella Carubv10003638m.g N
cassava29542.valid.m1 Manihot esculenta cassava29542.valid.m1 N
Ca_25867 Cicer arietinum Ca_25867 N
Ciclev10019732m.g Citrus clementina Ciclev10019732m.g N
Cla005647 Citrullus lanatus Cla005647 N
Cucsa.033690 Cucumis sativus Cucsa.033690 N
Eucgr.A01358 Eucalyptus grandis Eucgr.A01358 N
fgenesh2_kg.6__3397__AT4G02990.1 Arabidopsis lyrata fgenesh2_kg.6__3397__AT4G02990.1 N
gene27730-v1.0-hybrid Fragaria vesca gene27730-v1.0-hybrid N
GLYMA02G38800 Glycine max GLYMA02G38800 N
Gorai.004G084100 Gossypium raimondii Gorai.004G084100 N
Lus10014877.g Linum usitatissimum Lus10014877.g N
mgf009605m Mimulus guttatus mgf009605m N
MTR_5g068860 Medicago truncatula MTR_5g068860 N
orange1.1g010066m.g Citrus sinensis orange1.1g010066m.g N
PGSC0003DMG400002856 Solanum tuberosum PGSC0003DMG400002856 N
PK15839.1 Cannabis sativa PK15839.1 N
Pm019894 Prunus mume Pm019894 N
POPTR_0014s13360 Populus trichocarpa POPTR_0014s13360 N
PRUPE_ppa004198mg Prunus persica PRUPE_ppa004198mg N
SapurV1A.0053s0470 Salix purpurea SapurV1A.0053s0470 N
Solyc04g005630.2 Solanum lycopersicum Solyc04g005630.2 N
TCM_004475 Theobroma cacao TCM_004475 N
Thhalv10028570m.g Eutrema salsugineum Thhalv10028570m.g N
VIT_07s0104g00720 Vitis vinifera VIT_07s0104g00720 N