Aquca_002_00349 (Aquilegia coerulea)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 Aquca_002_00349 T173883_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.618 0.618
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.618 0.618
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.618 0.618
E2FD
M06875_2.00 		Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH		 Dap-seq
OMalley et al.(2016)
DEL2_col_a 		0.603 0.603
E2FD
M06876_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL2_colamp_a 		0.603 0.603
E2FD
M10442_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L1_Q2 		0.603 0.603
E2FD
M10443_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L_Q2 		0.603 0.603
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.537 0.537
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.537 0.537
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.537 0.537
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.537 0.537
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.537 0.537
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.537 0.537
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.529 0.529
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.529 0.529
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.529 0.529
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Aquca_002_00349.1 E2F 33 97
Aquca_002_00349.1 E2F 168 251

Links

Other E2F family TFs
Other Aquilegia coerulea TFs

307 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMSG_03636 Thecamonas trahens AMSG_03636 I
HSFA4A Arabidopsis thaliana AT4G18880 D
Bo01835s010 Brassica oleracea Bo01835s010 N
Bo1g007320 Brassica oleracea Bo1g007320 I
Bo1g020010 Brassica oleracea Bo1g020010 I
Bo2g165560 Brassica oleracea Bo2g165560 I
Bo3g157380 Brassica oleracea Bo3g157380 I
Bo4g190160 Brassica oleracea Bo4g190160 I
Bo7g061750 Brassica oleracea Bo7g061750 I
Bo7g106320 Brassica oleracea Bo7g106320 I
Bostr.0556s0470 Boechera stricta Bostr.0556s0470 I
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I
Bostr.30275s0431 Boechera stricta Bostr.30275s0431 I
Bostr.3359s0057 Boechera stricta Bostr.3359s0057 I
Bra002882 Brassica rapa Bra002882 I
Bra012571 Brassica rapa Bra012571 I
Bra013358 Brassica rapa Bra013358 I
Bra013406 Brassica rapa Bra013406 I
Bra013412 Brassica rapa Bra013412 I
Bra016996 Brassica rapa Bra016996 I
Bra016998 Brassica rapa Bra016998 I
Bra029226 Brassica rapa Bra029226 I
Bra029228 Brassica rapa Bra029228 N
Bra030021 Brassica rapa Bra030021 I
BRADI3G43710 Brachypodium distachyon BRADI3G43710 I
Cagra.13025s0005 Capsella grandiflora Cagra.13025s0005 I
Cagra.2848s0007 Capsella grandiflora Cagra.2848s0007 I
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I
Carubv10004953m.g Capsella rubella Carubv10004953m.g I
Carubv10007333m.g Capsella rubella Carubv10007333m.g I
Carubv10027643m.g Capsella rubella Carubv10027643m.g I
cassava14764.m1 Manihot esculenta cassava14764.m1 I
cassava24811.valid.m1 Manihot esculenta cassava24811.valid.m1 I
Ca_00428 Cicer arietinum Ca_00428 I
Ca_08627 Cicer arietinum Ca_08627 I
Contig10067.0.g63 Oxytricha trifallax Contig10067.0.g63 I
Contig10723.0.g13 Oxytricha trifallax Contig10723.0.g13 I
ENSAMEG00000017238 Ailuropoda melanoleuca ENSAMEG00000017238 I
HSF4 Bos taurus ENSBTAG00000003514 I
ENSBTAP00000004568-D1 Bos grunniens ENSBTAP00000004568-D1 I
HSF4 Canis familiaris ENSCAFG00000020379 I
HSF4 Cavia porcellus ENSCPOG00000010834 I
ENSCSAG00000003768 Chlorocebus sabaeus ENSCSAG00000003768 I
HSF4 Dasypus novemcinctus ENSDNOG00000032363 I
Hsf4 Dipodomys ordii ENSDORG00000015128 I
HSF4 Equus caballus ENSECAG00000016708 I
HSF4 Felis catus ENSFCAG00000014099 I
HSF4 Homo sapiens ENSG00000102878 D
HSF4 Gorilla gorilla ENSGGOG00000011899 I
HSF4 Loxodonta africana ENSLAFG00000021984 I
HSF4 Microcebus murinus ENSMICG00000007714 I
HSF4 Myotis lucifugus ENSMLUG00000011083 I
HSF4 Macaca mulatta ENSMMUG00000005906 I
ENSMPUG00000005418 Mustela putorius furo ENSMPUG00000005418 I
Hsf4 Mus musculus ENSMUSG00000033249 I
ENSNLEG00000004338 Nomascus leucogenys ENSNLEG00000004338 I
ENSOARG00000002740 Ovis aries ENSOARG00000002740 I
HSF4 Oryctolagus cuniculus ENSOCUG00000010001 I
HSF4 Otolemur garnettii ENSOGAG00000001391 I
HSF4 Ochotona princeps ENSOPRG00000015074 I
ENSPANG00000005017 Papio anubis ENSPANG00000005017 I
HSF4 Procavia capensis ENSPCAG00000013012 I
ENSPPYG00000007441 Pongo abelii ENSPPYG00000007441 I
HSF4 Pan troglodytes ENSPTRG00000034007 I
HSF4 Pteropus vampyrus ENSPVAG00000000402 I
Hsf4 Rattus norvegicus ENSRNOG00000015253 I
HSF4 Sus scrofa ENSSSCG00000002792 I
ENSSTOG00000027009 Ictidomys tridecemlineatus ENSSTOG00000027009 I
HSF4 Tursiops truncatus ENSTTRG00000010241 I
Eucgr.E02813 Eucalyptus grandis Eucgr.E02813 I
EuGene.0200010072 Micromonas sp RCC299 EuGene.0200010072 I
evm.TU.supercontig_2.169 Carica papaya evm.TU.supercontig_2.169 I
fgenesh1_pg.C_scaffold_7000870 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7000870 I
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I
Gorai.009G032300 Gossypium raimondii Gorai.009G032300 I
Gorai.N013300 Gossypium raimondii Gorai.N013300 I
GRMZM2G179802 Zea mays GRMZM2G179802 I
Lus10022083.g Linum usitatissimum Lus10022083.g I
MDP0000126826 Malus domestica MDP0000126826 I
MTR_8g105780 Medicago truncatula MTR_8g105780 I
Pm005887 Prunus mume Pm005887 I
POPTR_0008s13620 Populus trichocarpa POPTR_0008s13620 I
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I
PRUPE_ppa006514mg Prunus persica PRUPE_ppa006514mg I
SapurV1A.0015s0620 Salix purpurea SapurV1A.0015s0620 I
scaffold_601314.1 Arabidopsis lyrata scaffold_601314.1 I
SCLCIDRAFT_1218516 Scleroderma citrinum SCLCIDRAFT_1218516 I
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I
VIT_10s0003g01770 Vitis vinifera VIT_10s0003g01770 I