Bra016996 (Brassica rapa)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 Bra016996 T239853_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.340 0.409
HSFA1E
M06939_2.00 		Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_col_a 		0.338 0.352
HSFA1E
M06940_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a 		0.338 0.352
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016996.1-P HSF 41 134

Links

Other HSF family TFs
Other Brassica rapa TFs

284 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra016998 Brassica rapa Bra016998 I 0.607
Bo4g190160 Brassica oleracea Bo4g190160 I 0.604
Bo7g061750 Brassica oleracea Bo7g061750 I 0.466
Bo2g165560 Brassica oleracea Bo2g165560 I 0.396
Bra029226 Brassica rapa Bra029226 I 0.396
Bostr.3359s0057 Boechera stricta Bostr.3359s0057 I 0.390
Cagra.2848s0007 Capsella grandiflora Cagra.2848s0007 I 0.390
Bo2g165540 Brassica oleracea Bo2g165540 I 0.381
Bostr.0556s0470 Boechera stricta Bostr.0556s0470 I 0.380
Bra030021 Brassica rapa Bra030021 I 0.377
Bra002882 Brassica rapa Bra002882 I 0.370
Carubv10027643m.g Capsella rubella Carubv10027643m.g I 0.368
AMTR_s00069p00130920 Amborella trichopoda AMTR_s00069p00130920 I 0.361
VIT_05s0020g04090 Vitis vinifera VIT_05s0020g04090 I 0.358
mgf006947m Mimulus guttatus mgf006947m I 0.357
PRUPE_ppa006534mg Prunus persica PRUPE_ppa006534mg I 0.353
Pm010169 Prunus mume Pm010169 I 0.353
EuGene.0200010072 Micromonas sp RCC299 EuGene.0200010072 I 0.353
evm.TU.supercontig_124.4 Carica papaya evm.TU.supercontig_124.4 I 0.351
AMTR_s00040p00209530 Amborella trichopoda AMTR_s00040p00209530 I 0.350
Bo01835s010 Brassica oleracea Bo01835s010 N 0.349
Bostr.26959s0010 Boechera stricta Bostr.26959s0010 I 0.349
Carubv10024599m.g Capsella rubella Carubv10024599m.g I 0.349
Bra013412 Brassica rapa Bra013412 I 0.346
mgf009243m Mimulus guttatus mgf009243m I 0.344
Eucgr.E00253 Eucalyptus grandis Eucgr.E00253 I 0.344
Gorai.007G033300 Gossypium raimondii Gorai.007G033300 I 0.344
GLYMA05G29470 Glycine max GLYMA05G29470 I 0.342
GLYMA08G12630 Glycine max GLYMA08G12630 I 0.342
cassava24811.valid.m1 Manihot esculenta cassava24811.valid.m1 I 0.342
PK09831.1 Cannabis sativa PK09831.1 I 0.342
HSFA1D Arabidopsis thaliana AT1G32330 I 0.341
Bo1g017810 Brassica oleracea Bo1g017810 I 0.341
Bra040179 Brassica rapa Bra040179 I 0.341
CHLREDRAFT_117914 Chlamydomonas reinhardtii CHLREDRAFT_117914 I 0.341
ATHSFA1D Arabidopsis lyrata fgenesh2_kg.1__3374__AT1G32330.1 I 0.341
TCM_029630 Theobroma cacao TCM_029630 I 0.341
HSFA4A Arabidopsis thaliana AT4G18880 D 0.340
Bra032023 Brassica rapa Bra032023 I 0.340
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I 0.340
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I 0.340
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I 0.340
Carubv10004953m.g Capsella rubella Carubv10004953m.g I 0.340
Lus10005420.g Linum usitatissimum Lus10005420.g I 0.340
Lus10015237.g Linum usitatissimum Lus10015237.g I 0.340
Bra001071 Brassica rapa Bra001071 I 0.339
MTR_5g029680 Medicago truncatula MTR_5g029680 I 0.339
MTR_8g087540 Medicago truncatula MTR_8g087540 I 0.339
POPTR_0003s09370 Populus trichocarpa POPTR_0003s09370 I 0.339
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I 0.339
PRUPE_ppa004782mg Prunus persica PRUPE_ppa004782mg I 0.339
Ca_10406 Cicer arietinum Ca_10406 I 0.339
Cla008974 Citrullus lanatus Cla008974 I 0.339
30054.m000802 Ricinus communis 30054.m000802 I 0.339
Cucsa.321980 Cucumis sativus Cucsa.321980 I 0.339
mgf006143m Mimulus guttatus mgf006143m I 0.339
Aquca_005_00532 Aquilegia coerulea Aquca_005_00532 I 0.339
evm.TU.supercontig_90.16 Carica papaya evm.TU.supercontig_90.16 I 0.339
Lus10011065.g Linum usitatissimum Lus10011065.g I 0.339
Lus10040091.g Linum usitatissimum Lus10040091.g I 0.339
AMTR_s00048p00075850 Amborella trichopoda AMTR_s00048p00075850 I 0.338
HSFA1E Arabidopsis thaliana AT3G02990 D 0.338
Bo1g020010 Brassica oleracea Bo1g020010 I 0.338
Bra013358 Brassica rapa Bra013358 I 0.338
Bra013406 Brassica rapa Bra013406 I 0.338
BRADI3G43710 Brachypodium distachyon BRADI3G43710 I 0.338
ATHSFA1E Arabidopsis lyrata fgenesh2_kg.3__246__AT3G02990.1 I 0.338
GLYMA09G33920 Glycine max GLYMA09G33920 I 0.338
GRMZM2G179802 Zea mays GRMZM2G179802 I 0.338
PGSC0003DMG400014811 Solanum tuberosum PGSC0003DMG400014811 I 0.338
scaffold_201202.1 Arabidopsis lyrata scaffold_201202.1 I 0.338
Ca_11487 Cicer arietinum Ca_11487 I 0.338
cassava44107.valid.m1 Manihot esculenta cassava44107.valid.m1 I 0.338
cassava44108.valid.m1 Manihot esculenta cassava44108.valid.m1 I 0.338
Bostr.19046s0011 Boechera stricta Bostr.19046s0011 I 0.338
Cagra.1194s0002 Capsella grandiflora Cagra.1194s0002 I 0.338
Carubv10013628m.g Capsella rubella Carubv10013628m.g I 0.338
Gorai.004G257000 Gossypium raimondii Gorai.004G257000 I 0.338
Gorai.011G036400 Gossypium raimondii Gorai.011G036400 I 0.338
Lus10030956.g Linum usitatissimum Lus10030956.g I 0.338
SapurV1A.0852s0050 Salix purpurea SapurV1A.0852s0050 I 0.338
HSFA1A Arabidopsis thaliana AT4G17750 I 0.337
Bo5g150300 Brassica oleracea Bo5g150300 I 0.337
CML277C Cyanidioschyzon merolae CML277C I 0.337
TCM_016563 Theobroma cacao TCM_016563 I 0.337
Bostr.30275s0239 Boechera stricta Bostr.30275s0239 I 0.337
gene13904-v1.0-hybrid Fragaria vesca gene13904-v1.0-hybrid I 0.337
Gorai.003G183900 Gossypium raimondii Gorai.003G183900 I 0.337
Gorai.008G225200 Gossypium raimondii Gorai.008G225200 I 0.337
Lus10000312.g Linum usitatissimum Lus10000312.g I 0.337
orange1.1g010166m.g Citrus sinensis orange1.1g010166m.g I 0.337
SapurV1A.0182s0110 Salix purpurea SapurV1A.0182s0110 I 0.337
PK05866.1 Cannabis sativa PK05866.1 I 0.337
Bo3g055950 Brassica oleracea Bo3g055950 I 0.336
POPTR_0013s07740 Populus trichocarpa POPTR_0013s07740 I 0.336
Ca_08627 Cicer arietinum Ca_08627 I 0.336
cassava14764.m1 Manihot esculenta cassava14764.m1 I 0.336
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I 0.336
Gorai.010G240800 Gossypium raimondii Gorai.010G240800 I 0.336
PGSC0003DMG400017846 Solanum tuberosum PGSC0003DMG400017846 I 0.335
SELMODRAFT_39381 Selaginella moellendorffii SELMODRAFT_39381 I 0.335
SELMODRAFT_39384 Selaginella moellendorffii SELMODRAFT_39384 I 0.335
Solyc08g005170.2 Solanum lycopersicum Solyc08g005170.2 I 0.335
VIT_16s0039g01840 Vitis vinifera VIT_16s0039g01840 I 0.335
Pm023178 Prunus mume Pm023178 I 0.335
Eucgr.E02813 Eucalyptus grandis Eucgr.E02813 I 0.335
MDP0000156337 Malus domestica MDP0000156337 I 0.335
SapurV1A.0181s0030 Salix purpurea SapurV1A.0181s0030 I 0.335
Solyc02g072000.2 Solanum lycopersicum Solyc02g072000.2 I 0.334
VIT_10s0003g01770 Vitis vinifera VIT_10s0003g01770 I 0.334
Gorai.013G183500 Gossypium raimondii Gorai.013G183500 I 0.334
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I 0.334
BGIOSGA006438 Oryza indica BGIOSGA006438 I 0.333
Bo7g106320 Brassica oleracea Bo7g106320 I 0.333
Bra012571 Brassica rapa Bra012571 I 0.333
F775_00937 Aegilops tauschii F775_00937 I 0.333
GLYMA14G11030 Glycine max GLYMA14G11030 I 0.333
LPERR02G13860 Leersia perrieri LPERR02G13860 I 0.333
OGLUM02G17550 Oryza glumaepatula OGLUM02G17550 I 0.333
OMERI02G17330 Oryza meridionalis OMERI02G17330 I 0.333
ONIVA02G18700 Oryza nivara ONIVA02G18700 I 0.333
ORUFI02G18130 Oryza rufipogon ORUFI02G18130 I 0.333
HSFA5 Oryza sativa OS02G0496100 I 0.333
Traes_6AS_1537629B3 Triticum aestivum Traes_6AS_1537629B3 I 0.333
GRMZM2G118485 Zea mays GRMZM2G118485 I 0.332
Si019082m.g Setaria italica Si019082m.g I 0.332
Cagra.3356s0067 Capsella grandiflora Cagra.3356s0067 I 0.332
Carubv10004840m.g Capsella rubella Carubv10004840m.g I 0.332
MDP0000126826 Malus domestica MDP0000126826 I 0.332
Bo3g157380 Brassica oleracea Bo3g157380 I 0.331
PGSC0003DMG400028414 Solanum tuberosum PGSC0003DMG400028414 I 0.331
SapurV1A.0151s0340 Salix purpurea SapurV1A.0151s0340 I 0.331
SapurV1A.3823s0010 Salix purpurea SapurV1A.3823s0010 I 0.331
Bo4g190190 Brassica oleracea Bo4g190190 N 0.330
BRADI1G08890 Brachypodium distachyon BRADI1G08890 I 0.330
MTR_8g105780 Medicago truncatula MTR_8g105780 I 0.330
Sb04g020050 Sorghum bicolor Sb04g020050 I 0.330
Aquca_017_00542 Aquilegia coerulea Aquca_017_00542 I 0.330
Lus10029269.g Linum usitatissimum Lus10029269.g I 0.330
SapurV1A.0208s0230 Salix purpurea SapurV1A.0208s0230 I 0.330
BGIOSGA031910 Oryza indica BGIOSGA031910 I 0.329
Bo1g155010 Brassica oleracea Bo1g155010 I 0.329
Bra021381 Brassica rapa Bra021381 I 0.329
BRADI3G26920 Brachypodium distachyon BRADI3G26920 I 0.329
GRMZM2G026742 Zea mays GRMZM2G026742 I 0.329
GSMUA_Achr6G24430_001 Musa acuminata GSMUA_Achr6G24430_001 I 0.329
LPERR10G07380 Leersia perrieri LPERR10G07380 I 0.329
MLOC_498 Hordeum vulgare MLOC_498 I 0.329
OB10G18020 Oryza brachyantha OB10G18020 I 0.329
OBART10G10150 Oryza barthii OBART10G10150 I 0.329
OGLUM10G10060 Oryza glumaepatula OGLUM10G10060 I 0.329
OLONG_017397 Oryza longistaminata OLONG_017397 I 0.329
OMERI10G07540 Oryza meridionalis OMERI10G07540 I 0.329
ONIVA10G09550 Oryza nivara ONIVA10G09550 I 0.329
OPUNC02G15430 Oryza punctata OPUNC02G15430 I 0.329
OPUNC07G04790 Oryza punctata OPUNC07G04790 I 0.329
OPUNC10G08860 Oryza punctata OPUNC10G08860 I 0.329
ORGLA10G0088100 Oryza glaberrima ORGLA10G0088100 I 0.329
ORUFI10G10710 Oryza rufipogon ORUFI10G10710 I 0.329
HSFA2C Oryza sativa OS10G0419300 I 0.329
Sb01g008380 Sorghum bicolor Sb01g008380 I 0.329
Sb01g021490 Sorghum bicolor Sb01g021490 I 0.329
Sb01g042370 Sorghum bicolor Sb01g042370 I 0.329
Sb02g004370 Sorghum bicolor Sb02g004370 I 0.329
Si036304m.g Setaria italica Si036304m.g I 0.329
orange1.1g015635m.g Citrus sinensis orange1.1g015635m.g I 0.329
Pavir.Ib03391 Panicum virgatum Pavir.Ib03391 I 0.329
POPTR_0006s11680 Populus trichocarpa POPTR_0006s11680 I 0.328
Si036148m.g Setaria italica Si036148m.g I 0.328
PK25112.1 Cannabis sativa PK25112.1 I 0.328
MLOC_75519 Hordeum vulgare MLOC_75519 I 0.327
POPTR_0004s06090 Populus trichocarpa POPTR_0004s06090 I 0.327
scaffold_601314.1 Arabidopsis lyrata scaffold_601314.1 I 0.327
orange1.1g011077m.g Citrus sinensis orange1.1g011077m.g I 0.327
Bo5g048950 Brassica oleracea Bo5g048950 I 0.326
Bra016994 Brassica rapa Bra016994 N 0.326
Bra023258 Brassica rapa Bra023258 I 0.326
GSMUA_Achr4G17040_001 Musa acuminata GSMUA_Achr4G17040_001 I 0.326
Si030256m.g Setaria italica Si030256m.g I 0.326
Traes_6DS_C59B6322F Triticum aestivum Traes_6DS_C59B6322F I 0.326
TRIUR3_11025 Triticum urartu TRIUR3_11025 I 0.326
Ca_00428 Cicer arietinum Ca_00428 I 0.326
Eucgr.K03325 Eucalyptus grandis Eucgr.K03325 I 0.326
Pavir.J18081 Panicum virgatum Pavir.J18081 I 0.326
GRMZM2G125969 Zea mays GRMZM2G125969 I 0.325
MTR_6g043060 Medicago truncatula MTR_6g043060 I 0.325
PGSC0003DMG401027812 Solanum tuberosum PGSC0003DMG401027812 I 0.325
VIT_12s0028g01410 Vitis vinifera VIT_12s0028g01410 I 0.325
estExt_Genewise1.C_840063 Physcomitrella patens estExt_Genewise1.C_840063 I 0.325
Pavir.Ba03710 Panicum virgatum Pavir.Ba03710 I 0.325
chr4.CM0046.500.nc Lotus japonicus chr4.CM0046.500.nc I 0.325
BGIOSGA025247 Oryza indica BGIOSGA025247 I 0.324
Bo9g181780 Brassica oleracea Bo9g181780 I 0.324
OBART07G04960 Oryza barthii OBART07G04960 I 0.324
OGLUM07G04480 Oryza glumaepatula OGLUM07G04480 I 0.324
OLONG_011402 Oryza longistaminata OLONG_011402 I 0.324
OMERI07G03500 Oryza meridionalis OMERI07G03500 I 0.324
ONIVA07G03730 Oryza nivara ONIVA07G03730 I 0.324
ORGLA07G0042500 Oryza glaberrima ORGLA07G0042500 I 0.324
ORUFI07G04770 Oryza rufipogon ORUFI07G04770 I 0.324
HSFA2B Oryza sativa OS07G0178600 I 0.324
PGSC0003DMG400027036 Solanum tuberosum PGSC0003DMG400027036 I 0.324
POPTR_0014s13780 Populus trichocarpa POPTR_0014s13780 I 0.324
TRIUR3_02308 Triticum urartu TRIUR3_02308 I 0.324
VIT_00s0179g00150 Vitis vinifera VIT_00s0179g00150 I 0.324
e_gw1.6.1274.1 Mucor circinelloides e_gw1.6.1274.1 I 0.324
Cagra.0796s0014 Capsella grandiflora Cagra.0796s0014 I 0.324
Carubv10026722m.g Capsella rubella Carubv10026722m.g I 0.324
Eucgr.A01948 Eucalyptus grandis Eucgr.A01948 I 0.324
Eucgr.C03457 Eucalyptus grandis Eucgr.C03457 I 0.324
Gorai.006G224000 Gossypium raimondii Gorai.006G224000 I 0.324
Lus10007318.g Linum usitatissimum Lus10007318.g I 0.324
Lus10016634.g Linum usitatissimum Lus10016634.g I 0.324
Thhalv10025116m.g Eutrema salsugineum Thhalv10025116m.g I 0.324
Bra009515 Brassica rapa Bra009515 I 0.323
GLYMA10G00560 Glycine max GLYMA10G00560 I 0.323
MTR_8g083100 Medicago truncatula MTR_8g083100 I 0.323
Si035840m.g Setaria italica Si035840m.g I 0.323
Solyc03g006000.2 Solanum lycopersicum Solyc03g006000.2 I 0.323
AT-HSFA3 Vitis vinifera VIT_08s0007g03900 I 0.323
30026.m001484 Ricinus communis 30026.m001484 I 0.323
MDP0000263056 Malus domestica MDP0000263056 I 0.323
Bo1g007320 Brassica oleracea Bo1g007320 I 0.322
Bra020988 Brassica rapa Bra020988 I 0.322
F775_19394 Aegilops tauschii F775_19394 I 0.322
GLYMA01G01990 Glycine max GLYMA01G01990 I 0.322
MTR_2g100670 Medicago truncatula MTR_2g100670 I 0.322
MTR_2g100680 Medicago truncatula MTR_2g100680 I 0.322
POPTR_0008s13620 Populus trichocarpa POPTR_0008s13620 I 0.322
SCLCIDRAFT_1218516 Scleroderma citrinum SCLCIDRAFT_1218516 I 0.322
Solyc08g076590.2 Solanum lycopersicum Solyc08g076590.2 I 0.322
TRAES3BF002300100CFD_g Triticum aestivum TRAES3BF002300100CFD_g I 0.322
Gorai.013G220400 Gossypium raimondii Gorai.013G220400 I 0.322
Thhalv10000950m.g Eutrema salsugineum Thhalv10000950m.g I 0.322
Bo3g042080 Brassica oleracea Bo3g042080 I 0.321
Bra000557 Brassica rapa Bra000557 I 0.321
BRADI1G74350 Brachypodium distachyon BRADI1G74350 I 0.321
GSMUA_Achr3G06020_001 Musa acuminata GSMUA_Achr3G06020_001 I 0.321
SELMODRAFT_126488 Selaginella moellendorffii SELMODRAFT_126488 I 0.321
SELMODRAFT_37324 Selaginella moellendorffii SELMODRAFT_37324 I 0.321
Si036486m.g Setaria italica Si036486m.g I 0.321
Si038907m.g Setaria italica Si038907m.g I 0.321
Solyc06g072750.2 Solanum lycopersicum Solyc06g072750.2 I 0.321
Pavir.Ib00391 Panicum virgatum Pavir.Ib00391 I 0.321
Pavir.J15979 Panicum virgatum Pavir.J15979 I 0.321
chr6.CM0118.920.nd Lotus japonicus chr6.CM0118.920.nd I 0.321
Bo1g021700 Brassica oleracea Bo1g021700 I 0.320
Bo2g161830 Brassica oleracea Bo2g161830 I 0.320
OB03G44190 Oryza brachyantha OB03G44190 I 0.320
Sb01g005250 Sorghum bicolor Sb01g005250 I 0.320
Solyc09g082670.2 Solanum lycopersicum Solyc09g082670.2 I 0.320
cassava18058.valid.m1 Manihot esculenta cassava18058.valid.m1 I 0.320
Cucsa.212820 Cucumis sativus Cucsa.212820 I 0.320
gw1.207.102.1 Physcomitrella patens gw1.207.102.1 I 0.320
Eucgr.C03454 Eucalyptus grandis Eucgr.C03454 I 0.320
Eucgr.C03456 Eucalyptus grandis Eucgr.C03456 I 0.320
Gorai.012G044200 Gossypium raimondii Gorai.012G044200 I 0.320
Lus10022083.g Linum usitatissimum Lus10022083.g I 0.320
PK12544.1 Cannabis sativa PK12544.1 I 0.320
PDK_20s1342122g001 Phoenix dactylifera PDK_20s1342122g001 I 0.320
HSFA4C Arabidopsis thaliana AT5G45710 I 0.319
HSFA9 Arabidopsis thaliana AT5G54070 I 0.319
Bo9g062710 Brassica oleracea Bo9g062710 I 0.319
Bra017595 Brassica rapa Bra017595 I 0.319
BRADI1G05550 Brachypodium distachyon BRADI1G05550 I 0.319
HSF4 Cavia porcellus ENSCPOG00000010834 I 0.319
GLYMA10G07620 Glycine max GLYMA10G07620 I 0.319
GLYMA16G13400 Glycine max GLYMA16G13400 I 0.319
LPERR03G04120 Leersia perrieri LPERR03G04120 I 0.319
MLOC_6206 Hordeum vulgare MLOC_6206 I 0.319
OB03G14700 Oryza brachyantha OB03G14700 I 0.319
OPUNC03G04310 Oryza punctata OPUNC03G04310 I 0.319
PRUPE_ppa004559mg Prunus persica PRUPE_ppa004559mg I 0.319
SELMODRAFT_15442 Selaginella moellendorffii SELMODRAFT_15442 I 0.319
Traes_4BL_2E125A702 Triticum aestivum Traes_4BL_2E125A702 I 0.319
Cla007462 Citrullus lanatus Cla007462 I 0.319
Pm011227 Prunus mume Pm011227 I 0.319
Cucsa.355680 Cucumis sativus Cucsa.355680 I 0.319
estExt_Genewise1.C_310312 Physcomitrella patens estExt_Genewise1.C_310312 I 0.319
evm.TU.supercontig_50.58 Carica papaya evm.TU.supercontig_50.58 I 0.319
Bra022949 Brassica rapa Bra022949 I 0.318
TCM_025482 Theobroma cacao TCM_025482 I 0.318
SapurV1A.0015s0620 Salix purpurea SapurV1A.0015s0620 I 0.318
chr5.CM0359.140.nc Lotus japonicus chr5.CM0359.140.nc I 0.318