Bo2g165540 (Brassica oleracea)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 Bo2g165540 T239783_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSF4
M03325_2.00 		Homo sapiens
GAANNTTCBVGAA
TTCBVGAANNTTC		 SELEX
Jolma et al.(2013)
HSF4_1 		0.333 0.381
HSF4
M05509_2.00 		Homo sapiens
VGAABVTTCKVGAAN
NTTCBMGAABVTTCB		 SELEX
Yin et al.(2017)
HSF4_eDBD_HT-SELEX 		0.333 0.381
HSF4
M10862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF4_Q3 		0.333 0.381
HSF4
M05510_2.00 		Homo sapiens
RGAABVWDCYRGAWN
NWTCYRGHWBVTTCY		 SELEX
Yin et al.(2017)
HSF4_eDBD_Methyl-HT-SELEX 		0.333 0.381
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.322 0.500
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g165540.1 HSF 43 131

Links

Other HSF family TFs
Other Brassica oleracea TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra029226 Brassica rapa Bra029226 I 0.531
Bo2g165560 Brassica oleracea Bo2g165560 I 0.527
Bo01835s010 Brassica oleracea Bo01835s010 N 0.455
Bo7g061750 Brassica oleracea Bo7g061750 I 0.403
Bo4g190160 Brassica oleracea Bo4g190160 I 0.381
Bra016996 Brassica rapa Bra016996 I 0.381
Bra016998 Brassica rapa Bra016998 I 0.381
Bra002882 Brassica rapa Bra002882 I 0.376
Bostr.0556s0470 Boechera stricta Bostr.0556s0470 I 0.368
Bra029228 Brassica rapa Bra029228 N 0.359
Bostr.3359s0057 Boechera stricta Bostr.3359s0057 I 0.358
EuGene.0200010072 Micromonas sp RCC299 EuGene.0200010072 I 0.355
Bra013412 Brassica rapa Bra013412 I 0.354
Bra030021 Brassica rapa Bra030021 I 0.349
POPTR_0008s13620 Populus trichocarpa POPTR_0008s13620 I 0.348
fgenesh1_pg.C_scaffold_7000870 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7000870 I 0.346
scaffold_601314.1 Arabidopsis lyrata scaffold_601314.1 I 0.346
Bra013406 Brassica rapa Bra013406 I 0.342
HSF4 Felis catus ENSFCAG00000014099 I 0.336
Bo1g007320 Brassica oleracea Bo1g007320 I 0.335
HSF4 Dasypus novemcinctus ENSDNOG00000032363 I 0.334
ENSAMEG00000017238 Ailuropoda melanoleuca ENSAMEG00000017238 I 0.333
HSF4 Bos taurus ENSBTAG00000003514 I 0.333
HSF4 Canis familiaris ENSCAFG00000020379 I 0.333
ENSCSAG00000003768 Chlorocebus sabaeus ENSCSAG00000003768 I 0.333
Hsf4 Dipodomys ordii ENSDORG00000015128 I 0.333
HSF4 Equus caballus ENSECAG00000016708 I 0.333
HSF4 Homo sapiens ENSG00000102878 D 0.333
HSF4 Gorilla gorilla ENSGGOG00000011899 I 0.333
HSF4 Macaca mulatta ENSMMUG00000005906 I 0.333
ENSMPUG00000005418 Mustela putorius furo ENSMPUG00000005418 I 0.333
Hsf4 Mus musculus ENSMUSG00000033249 I 0.333
ENSNLEG00000004338 Nomascus leucogenys ENSNLEG00000004338 I 0.333
ENSOARG00000002740 Ovis aries ENSOARG00000002740 I 0.333
HSF4 Oryctolagus cuniculus ENSOCUG00000010001 I 0.333
HSF4 Otolemur garnettii ENSOGAG00000001391 I 0.333
HSF4 Ochotona princeps ENSOPRG00000015074 I 0.333
ENSPANG00000005017 Papio anubis ENSPANG00000005017 I 0.333
ENSPPYG00000007441 Pongo abelii ENSPPYG00000007441 I 0.333
HSF4 Pan troglodytes ENSPTRG00000034007 I 0.333
HSF4 Pteropus vampyrus ENSPVAG00000000402 I 0.333
HSF4 Sus scrofa ENSSSCG00000002792 I 0.333
ENSSTOG00000027009 Ictidomys tridecemlineatus ENSSTOG00000027009 I 0.333
HSF4 Tursiops truncatus ENSTTRG00000010241 I 0.333
ENSBTAP00000004568-D1 Bos grunniens ENSBTAP00000004568-D1 I 0.333
HSF4 Cavia porcellus ENSCPOG00000010834 I 0.332
Cagra.2848s0007 Capsella grandiflora Cagra.2848s0007 I 0.332
Lus10022083.g Linum usitatissimum Lus10022083.g I 0.332
HSF4 Loxodonta africana ENSLAFG00000021984 I 0.331
HSF4 Myotis lucifugus ENSMLUG00000011083 I 0.331
SCLCIDRAFT_1218516 Scleroderma citrinum SCLCIDRAFT_1218516 I 0.330
AMSG_03636 Thecamonas trahens AMSG_03636 I 0.329
MTR_8g105780 Medicago truncatula MTR_8g105780 I 0.329
GRMZM2G179802 Zea mays GRMZM2G179802 I 0.327
Bostr.30275s0431 Boechera stricta Bostr.30275s0431 I 0.327
SapurV1A.0015s0620 Salix purpurea SapurV1A.0015s0620 I 0.326
HSF4 Microcebus murinus ENSMICG00000007714 I 0.325
HSF4 Procavia capensis ENSPCAG00000013012 I 0.325
Hsf4 Rattus norvegicus ENSRNOG00000015253 I 0.325
Ca_00428 Cicer arietinum Ca_00428 I 0.325
Carubv10027643m.g Capsella rubella Carubv10027643m.g I 0.324
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I 0.324
Ca_08627 Cicer arietinum Ca_08627 I 0.323
HSFA4A Arabidopsis thaliana AT4G18880 D 0.322
Bo3g157380 Brassica oleracea Bo3g157380 I 0.322
Bo7g106320 Brassica oleracea Bo7g106320 I 0.322
Bra012571 Brassica rapa Bra012571 I 0.322
BRADI3G43710 Brachypodium distachyon BRADI3G43710 I 0.322
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I 0.322
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I 0.322
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I 0.322
Carubv10004953m.g Capsella rubella Carubv10004953m.g I 0.322
evm.TU.supercontig_2.169 Carica papaya evm.TU.supercontig_2.169 I 0.322
VIT_10s0003g01770 Vitis vinifera VIT_10s0003g01770 I 0.321
cassava14764.m1 Manihot esculenta cassava14764.m1 I 0.321
cassava24811.valid.m1 Manihot esculenta cassava24811.valid.m1 I 0.321
Cagra.13025s0005 Capsella grandiflora Cagra.13025s0005 I 0.321
Carubv10007333m.g Capsella rubella Carubv10007333m.g I 0.321
Bra013358 Brassica rapa Bra013358 I 0.320
Eucgr.E02813 Eucalyptus grandis Eucgr.E02813 I 0.320
Gorai.N013300 Gossypium raimondii Gorai.N013300 I 0.320
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I 0.320
Bo1g020010 Brassica oleracea Bo1g020010 I 0.319
PRUPE_ppa006514mg Prunus persica PRUPE_ppa006514mg I 0.319
Pm005887 Prunus mume Pm005887 I 0.319
Gorai.009G032300 Gossypium raimondii Gorai.009G032300 I 0.319
MDP0000126826 Malus domestica MDP0000126826 I 0.319
Contig10067.0.g63 Oxytricha trifallax Contig10067.0.g63 I 0.319
Contig10723.0.g13 Oxytricha trifallax Contig10723.0.g13 I 0.319
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I 0.318