cassava24584.valid.m1 (Manihot esculenta)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 cassava24584.valid.m1 T181040_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.886 0.886
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.886 0.886
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.716 0.716
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.716 0.716
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava24584.valid.m1 FAR1 79 166

Links

Other FAR1 family TFs
Other Manihot esculenta TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O3_08438 Capronia epimyces A1O3_08438 N
A1O5_11821 Cladophialophora psammophila A1O5_11821 N
A1O7_01135 Cladophialophora yegresii A1O7_01135 N
A1O9_11923 Exophiala aquamarina A1O9_11923 N
G647_01193 Cladophialophora carrionii G647_01193 N
PV04_00852 Capronia semiimmersa PV04_00852 N
PV06_10667 Exophiala oligosperma PV06_10667 N
PV07_06399 Cladophialophora immunda PV07_06399 N
PV08_05094 Exophiala spinifera PV08_05094 N
PV10_02780 Exophiala mesophila PV10_02780 N
PV11_10218 Exophiala sideris PV11_10218 N
Z519_01928 Cladophialophora bantiana Z519_01928 N