Gorai.005G134200 (Gossypium raimondii)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Gorai.005G134200 T181495_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.911 0.911
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.911 0.911
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.700 0.700
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G134200.10 FAR1 84 186
Gorai.005G134200.11 FAR1 84 186
Gorai.005G134200.1 FAR1 84 186
Gorai.005G134200.2 FAR1 84 186
Gorai.005G134200.3 FAR1 84 186
Gorai.005G134200.4 FAR1 84 186
Gorai.005G134200.5 FAR1 84 186
Gorai.005G134200.6 FAR1 84 186
Gorai.005G134200.7 FAR1 84 186
Gorai.005G134200.8 FAR1 84 186
Gorai.005G134200.9 FAR1 84 186

Links

Other FAR1 family TFs
Other Gossypium raimondii TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI2G07980 Brachypodium distachyon BRADI2G07980 N
F775_00575 Aegilops tauschii F775_00575 N
F775_02635 Aegilops tauschii F775_02635 N
Pavir.Eb00031 Panicum virgatum Pavir.Eb00031 N
Si005087m.g Setaria italica Si005087m.g N
TRAES3BF020500010CFD_g Triticum aestivum TRAES3BF020500010CFD_g N
TRAES3BF020500020CFD_g Triticum aestivum TRAES3BF020500020CFD_g N
Traes_2AS_FC3F1F39A Triticum aestivum Traes_2AS_FC3F1F39A N
Traes_2BS_E29F278C4 Triticum aestivum Traes_2BS_E29F278C4 N
Traes_3AS_16C02FAE7 Triticum aestivum Traes_3AS_16C02FAE7 N
Traes_3B_30A3E17C6 Triticum aestivum Traes_3B_30A3E17C6 N
Traes_3DS_ECB844CBC Triticum aestivum Traes_3DS_ECB844CBC N
TRIUR3_33205 Triticum urartu TRIUR3_33205 N