Gorai.002G029400 (Gossypium raimondii)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Gorai.002G029400 T196579_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.808 0.889
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.808 0.889
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.002G029400.1 GATA 41 76

Links

Other GATA family TFs
Other Gossypium raimondii TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29889.m003248 Ricinus communis 29889.m003248 I 0.816
AMTR_s00057p00121410 Amborella trichopoda AMTR_s00057p00121410 N 0.808
GATA15 Arabidopsis thaliana AT3G06740 D 0.808
GATA17 Arabidopsis thaliana AT3G16870 I 0.831
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.836
Bo00847s050 Brassica oleracea Bo00847s050 I 0.808
Bo1g055120 Brassica oleracea Bo1g055120 I 0.831
Bo1g122970 Brassica oleracea Bo1g122970 I 0.831
Bo3g068560 Brassica oleracea Bo3g068560 I 0.831
Bo5g123610 Brassica oleracea Bo5g123610 I 0.830
Bo7g092660 Brassica oleracea Bo7g092660 I 0.808
Bo7g104200 Brassica oleracea Bo7g104200 I 0.831
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.808
Bostr.22252s0362 Boechera stricta Bostr.22252s0362 I 0.808
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.831
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.836
Bra012742 Brassica rapa Bra012742 I 0.836
Bra021209 Brassica rapa Bra021209 I 0.831
Bra022184 Brassica rapa Bra022184 I 0.831
Bra033533 Brassica rapa Bra033533 I 0.831
Bra037421 Brassica rapa Bra037421 I 0.808
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.836
Cagra.0133s0025 Capsella grandiflora Cagra.0133s0025 I 0.808
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.831
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.836
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.831
Carubv10014841m.g Capsella rubella Carubv10014841m.g I 0.808
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.808
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.803
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.803
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.816
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.822
Ca_02992 Cicer arietinum Ca_02992 I 0.820
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.802
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.817
Cla009422 Citrullus lanatus Cla009422 I 0.817
Cla022104 Citrullus lanatus Cla022104 I 0.822
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.817
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.822
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.822
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.817
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.803
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.803
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.822
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.836
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.831
GATA15 Arabidopsis lyrata fgenesh2_kg.3__690__AT3G06740.1 I 0.808
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.822
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.816
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.816
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.822
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.802
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.802
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.803
GRMZM2G325850 Zea mays GRMZM2G325850 I 0.813
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.820
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.822
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.822
mgf003937m Mimulus guttatus mgf003937m I 0.822
mgf022078m Mimulus guttatus mgf022078m I 0.807
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.820
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.802
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.817
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.817
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.831
PK18820.1 Cannabis sativa PK18820.1 I 0.817
Pm008287 Prunus mume Pm008287 I 0.822
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.803
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.820
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.820
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.822
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.803
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.803
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.820
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.820
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.808
Solyc01g060490.2 Solanum lycopersicum Solyc01g060490.2 N 0.828
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.831
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.817
TCM_004753 Theobroma cacao TCM_004753 I 0.802
TCM_021303 Theobroma cacao TCM_021303 I 0.822
TCM_026732 Theobroma cacao TCM_026732 I 0.803
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.808
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.831
Thhalv10021708m.g Eutrema salsugineum Thhalv10021708m.g I 0.808
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.831
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.817