CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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orange1.1g045051m.g
(
Citrus sinensis
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
orange1.1g045051m.g
T202955_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
orange1.1g045051m
GRAS
325
696
LWTLLTLCAQAVANYDQRTANDFLKQIRQHSSPFGDGIQRLAHYFANGLEVRLAGTRTPVQTHLASSRASAAEVLQAYKVYVSSCPFNRMTFFMANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVVNGTYNAPFFLPRFREALFHFSTFFDMFESTVPREDQGRMIFEREIYGKDAMNVIACEGIERVERPETYKQWQARNLRAGFKQLELDKDILKTIRTLVKSNFHPDFVIDEAGEWMLQGWKGRLAYALSFWK
Links
Other
GRAS
family TFs
Other
Citrus sinensis
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28650.m000187
Ricinus communis
28650.m000187
N
0.703
cassava34369.m1
Manihot esculenta
cassava34369.m1
N
0.703
Ciclev10027926m.g
Citrus clementina
Ciclev10027926m.g
N
0.997
Ciclev10027940m.g
Citrus clementina
Ciclev10027940m.g
N
0.707
evm.TU.supercontig_81.122
Carica papaya
evm.TU.supercontig_81.122
N
0.711
orange1.1g045079m.g
Citrus sinensis
orange1.1g045079m.g
N
0.708
POPTR_0009s03850
Populus trichocarpa
POPTR_0009s03850
N
0.700
PRUPE_ppa019574mg
Prunus persica
PRUPE_ppa019574mg
N
0.700
PRUPE_ppa026849mg
Prunus persica
PRUPE_ppa026849mg
N
0.711