CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_81.122
(
Carica papaya
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
evm.TU.supercontig_81.122
T202537_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_81.122
GRAS
310
669
LSTLLMQCAQCVSSFDQRTATELLKQIRQHSSQFGDGTQRMAFYFANALEVRMAGAKTPVYSPILSCKTSAAEILQAYEVYVTACPFKKMSNFFANKTIVKLAEKATRLHIIDFGILYGFQWPCLIQRLSSRPNGPPNLRITGIELPQPGFRPAERVQETGHRLKRYCERFNVPFEYNFIAKKWETIKLEDLKIDRDETTVVNCLYRMKNIPDDTMVVNSSRDTVMKLIKEINPDLFVHGVVNGTYNAPFFVTRFREALFHFSSLFDMFEATVPREDQQRMMFEREVFGRDAMNVIACEGTERVERPETYKQWQVRNLRMGFRQLPLDHEILKRVKTMVKSSYHGDFVIDVDGRGGLRAL
Links
Other
GRAS
family TFs
Other
Carica papaya
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava34369.m1
Manihot esculenta
cassava34369.m1
N
0.750
28650.m000187
Ricinus communis
28650.m000187
N
0.747
TCM_041810
Theobroma cacao
TCM_041810
N
0.736
SapurV1A.0040s0520
Salix purpurea
SapurV1A.0040s0520
N
0.733
PRUPE_ppa002166mg
Prunus persica
PRUPE_ppa002166mg
N
0.728
POPTR_0009s03850
Populus trichocarpa
POPTR_0009s03850
N
0.725
PRUPE_ppa019574mg
Prunus persica
PRUPE_ppa019574mg
N
0.722
POPTR_0001s24890
Populus trichocarpa
POPTR_0001s24890
N
0.716
PRUPE_ppa026849mg
Prunus persica
PRUPE_ppa026849mg
N
0.716
PRUPE_ppa002472mg
Prunus persica
PRUPE_ppa002472mg
N
0.713
orange1.1g045051m.g
Citrus sinensis
orange1.1g045051m.g
N
0.711
SapurV1A.0041s0200
Salix purpurea
SapurV1A.0041s0200
N
0.711
Ciclev10027926m.g
Citrus clementina
Ciclev10027926m.g
N
0.708
Pm000713
Prunus mume
Pm000713
N
0.705
Ciclev10027940m.g
Citrus clementina
Ciclev10027940m.g
N
0.705
Gorai.003G130400
Gossypium raimondii
Gorai.003G130400
N
0.705