Bra008717 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra008717 T205062_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.861 0.911
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.861 0.911
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.845 0.929
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.845 0.929
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.723 0.875
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.723 0.875
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.711 0.607
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.711 0.607
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.711 0.607
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.708 0.625
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.693 0.821
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.675 0.786
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.675 0.786
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.675 0.786
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.675 0.786
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.662 0.786
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.662 0.786
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.662 0.786
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.662 0.768
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.657 0.804
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.657 0.804
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.657 0.804
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.657 0.804
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.617 0.607
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.617 0.607
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.606 0.518
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra008717.1-P Homeodomain 91 146

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

780 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R006576 Calypte anna Aan_R006576 I 0.000
Afo_R002092 Aptenodytes forsteri Afo_R002092 I 0.000
Afo_R014591 Aptenodytes forsteri Afo_R014591 I 0.000
Alligator_sinensis_CCG018668.1 Alligator sinensis Alligator_sinensis_CCG018668.1 I 0.000
Alligator_sinensis_CCG020455.1 Alligator sinensis Alligator_sinensis_CCG020455.1 I 0.000
BGLB001048 Biomphalaria glabrata BGLB001048 I 0.000
Brh_R005520 Buceros rhinoceros Brh_R005520 I 0.000
Cmyd_10011173 Chelonia mydas Cmyd_10011173 I 0.000
ZNF143 Anolis carolinensis ENSACAG00000009338 I 0.000
ENSAMEG00000000752 Ailuropoda melanoleuca ENSAMEG00000000752 I 0.000
ENSAMEG00000003872 Ailuropoda melanoleuca ENSAMEG00000003872 I 0.000
ENSAMXG00000003833 Astyanax mexicanus ENSAMXG00000003833 I 0.000
ENSAMXG00000008869 Astyanax mexicanus ENSAMXG00000008869 I 0.000
ENSAPLG00000002385 Anas platyrhynchos ENSAPLG00000002385 I 0.000
ZNF76 Bos taurus ENSBTAG00000006170 I 0.000
ENSBTAP00000008112-D1 Bos grunniens ENSBTAP00000008112-D1 I 0.000
ZNF76 Canis familiaris ENSCAFG00000001304 I 0.000
ZNF143 Canis familiaris ENSCAFG00000007373 I 0.000
ZNF76 Choloepus hoffmanni ENSCHOG00000003197 I 0.000
ZNF143 Callithrix jacchus ENSCJAG00000011327 I 0.000
ZNF76 Callithrix jacchus ENSCJAG00000015519 I 0.000
ZNF143 Cavia porcellus ENSCPOG00000003109 I 0.000
ZNF76 Cavia porcellus ENSCPOG00000007381 I 0.000
ENSCSAG00000004520 Chlorocebus sabaeus ENSCSAG00000004520 I 0.000
ENSCSAG00000009955 Chlorocebus sabaeus ENSCSAG00000009955 I 0.000
znf76 Danio rerio ENSDARG00000013279 I 0.000
znf143b Danio rerio ENSDARG00000041581 I 0.000
ZNF76 Dasypus novemcinctus ENSDNOG00000015856 I 0.000
ZNF76 Equus caballus ENSECAG00000014843 I 0.000
ZNF143 Equus caballus ENSECAG00000018889 I 0.000
ZNF143 Erinaceus europaeus ENSEEUG00000000955 I 0.000
ENSFALG00000000985 Ficedula albicollis ENSFALG00000000985 I 0.000
ENSFALG00000003698 Ficedula albicollis ENSFALG00000003698 I 0.000
ZNF143 Felis catus ENSFCAG00000002342 I 0.000
ZNF76 Felis catus ENSFCAG00000005893 I 0.000
ZNF76 Homo sapiens ENSG00000065029 D 0.000
ZNF143 Homo sapiens ENSG00000166478 D 0.000
znf143b Gasterosteus aculeatus ENSGACG00000009776 I 0.000
ZNF143 Gallus gallus ENSGALG00000005787 I 0.000
ZNF76 Gorilla gorilla ENSGGOG00000014188 I 0.000
ENSGMOG00000001888 Gadus morhua ENSGMOG00000001888 I 0.000
ENSLACG00000017669 Latimeria chalumnae ENSLACG00000017669 I 0.000
ZNF143 Loxodonta africana ENSLAFG00000004487 I 0.000
ZNF76 Loxodonta africana ENSLAFG00000026071 I 0.000
ENSLOCG00000003619 Lepisosteus oculatus ENSLOCG00000003619 I 0.000
ENSLOCG00000011655 Lepisosteus oculatus ENSLOCG00000011655 I 0.000
ENSMEUG00000003014 Macropus eugenii ENSMEUG00000003014 I 0.000
ZNF143 Meleagris gallopavo ENSMGAG00000006206 I 0.000
ZNF143 Microcebus murinus ENSMICG00000004353 I 0.000
ZNF143 Myotis lucifugus ENSMLUG00000000213 I 0.000
ZNF76 Myotis lucifugus ENSMLUG00000008610 I 0.000
ZNF143 Macaca mulatta ENSMMUG00000008758 I 0.000
ZNF76 Macaca mulatta ENSMMUG00000023559 I 0.000
ZNF143 Monodelphis domestica ENSMODG00000007909 I 0.000
ZNF76 Monodelphis domestica ENSMODG00000013806 I 0.000
ENSMPUG00000003522 Mustela putorius furo ENSMPUG00000003522 I 0.000
ENSMPUG00000012796 Mustela putorius furo ENSMPUG00000012796 I 0.000
Zfp523 Mus musculus ENSMUSG00000024220 I 0.000
Zfp143 Mus musculus ENSMUSG00000061079 D 0.000
ZNF143 Ornithorhynchus anatinus ENSOANG00000005853 I 0.000
ENSOARG00000012477 Ovis aries ENSOARG00000012477 I 0.000
ZNF143 Oryctolagus cuniculus ENSOCUG00000005226 I 0.000
ZNF76 Oryctolagus cuniculus ENSOCUG00000015630 I 0.000
ZNF76 Otolemur garnettii ENSOGAG00000002935 I 0.000
ZNF143 Otolemur garnettii ENSOGAG00000011518 I 0.000
ENSONIG00000015524 Oreochromis niloticus ENSONIG00000015524 I 0.000
ZNF143 Ochotona princeps ENSOPRG00000005466 I 0.000
ENSOPRG00000009136 Ochotona princeps ENSOPRG00000009136 I 0.000
znf143b Oryzias latipes ENSORLG00000001130 I 0.000
ENSP00000363064 Macaca fascicularis ENSP00000363064 I 0.000
ENSP00000379847 Macaca fascicularis ENSP00000379847 I 0.000
ENSP00000379847-D1 Bos grunniens ENSP00000379847-D1 I 0.000
ENSPANG00000002501 Papio anubis ENSPANG00000002501 I 0.000
ENSPANG00000021154 Papio anubis ENSPANG00000021154 I 0.000
ENSPFOG00000008911 Poecilia formosa ENSPFOG00000008911 I 0.000
ENSPPYG00000003495 Pongo abelii ENSPPYG00000003495 I 0.000
ENSPPYG00000016525 Pongo abelii ENSPPYG00000016525 I 0.000
ENSPSIG00000005652 Pelodiscus sinensis ENSPSIG00000005652 I 0.000
ENSPSIG00000009683 Pelodiscus sinensis ENSPSIG00000009683 I 0.000
ZNF143 Pan troglodytes ENSPTRG00000003349 I 0.000
ZNF76 Pan troglodytes ENSPTRG00000018080 I 0.000
ZNF76 Pteropus vampyrus ENSPVAG00000008041 I 0.000
Zfp523 Rattus norvegicus ENSRNOG00000000501 I 0.000
Zfp143 Rattus norvegicus ENSRNOG00000010087 I 0.000
ZNF143 Sorex araneus ENSSARG00000007780 I 0.000
ENSSHAG00000009934 Sarcophilus harrisii ENSSHAG00000009934 I 0.000
ZNF76 Sus scrofa ENSSSCG00000001537 I 0.000
ENSSTOG00000000256 Ictidomys tridecemlineatus ENSSTOG00000000256 I 0.000
ENSSTOG00000009647 Ictidomys tridecemlineatus ENSSTOG00000009647 I 0.000
ZNF76 Taeniopygia guttata ENSTGUG00000001745 I 0.000
ENSTGUG00000008153 Taeniopygia guttata ENSTGUG00000008153 I 0.000
znf143b Tetraodon nigroviridis ENSTNIG00000013739 I 0.000
znf143 Takifugu rubripes ENSTRUG00000009324 I 0.000
ENSTSYG00000004324 Tarsius syrichta ENSTSYG00000004324 I 0.000
ZNF76 Tursiops truncatus ENSTTRG00000009380 I 0.000
ZNF143 Tursiops truncatus ENSTTRG00000015353 I 0.000
ENSXMAG00000005152 Xiphophorus maculatus ENSXMAG00000005152 I 0.000
estExt_fgenesh2_pg.C_1970081 Branchiostoma floridae estExt_fgenesh2_pg.C_1970081 I 0.000
Gfo_R002960 Geospiza fortis Gfo_R002960 I 0.000
Gfo_R011843 Geospiza fortis Gfo_R011843 I 0.000
LotgiG222832 Lottia gigantea LotgiG222832 I 0.000
Myotis_brandtii_ZNF143_10021171 Myotis brandtii Myotis_brandtii_ZNF143_10021171 I 0.000
Myotis_brandtii_ZNF76_10017771 Myotis brandtii Myotis_brandtii_ZNF76_10017771 I 0.000
Ocbimv22038914m.g Octopus bimaculoides Ocbimv22038914m.g I 0.000
Ogr18895 Ophisaurus gracilis Ogr18895 I 0.000
Pvit_03784 Pogona vitticeps Pvit_03784 I 0.000
Sakowv30036637m.g Saccoglossus kowalevskii Sakowv30036637m.g I 0.000
Sakowv30044960m.g Saccoglossus kowalevskii Sakowv30044960m.g I 0.000
SMAR015659 Strigamia maritima SMAR015659 I 0.000
Tal_R001092 Tyto alba Tal_R001092 I 0.000
Tal_R002540 Tyto alba Tal_R002540 I 0.000
znf143 Xenopus tropicalis XB-GENE-1012504 I 0.000
znf143.S Xenopus laevis XB-GENE-1012509 I 0.000