estExt_fgenesh2_pg.C_1970081 (Branchiostoma floridae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 estExt_fgenesh2_pg.C_1970081 T138653_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF143
M02899_2.00 		Homo sapiens
YWCCCAYAATGCAYYG
CRRTGCATTRTGGGWR		 SELEX
Jolma et al.(2013)
ZNF143_1 		0.761 0.859
ZNF143
M07931_2.00 		Homo sapiens
RACTACAWYTCCCAG
CTGGGARWTGTAGTY		 ChIP-seq
Gerstein et al.(2012)
GM12878_ZNF143_Stanford 		0.761 0.859
ZNF143
M08910_2.00 		Homo sapiens
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY		 Misc
Kulakovskiy et al.(2013)
ZN143_HUMAN.H11MO.0.A 		0.761 0.859
ZNF143
M09510_2.00 		Homo sapiens
NNYTCCCAKVAKSCH
DGSMTBMTGGGARNN		 Misc
Heinz et al.(2010)
CUTLL-ZNF143_GSE29600 		0.761 0.859
ZNF143
M10247_2.00 		Homo sapiens
NYYWCCCABMATGCAHYRCRNB
VNYGYRDTGCATKVTGGGWRRN		 Transfac
Matys et al.(2006)
V$STAF_01 		0.761 0.859
ZNF143
M10248_2.00 		Homo sapiens
MHBWCCCAKVRTBCMWHGMRV
BYKCDWKGVAYBMTGGGWVDK		 Transfac
Matys et al.(2006)
V$STAF_02 		0.761 0.859
ZNF143
M10249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STAF_Q4_01 		0.761 0.859
Zfp143
M09010_2.00 		Mus musculus
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY		 Misc
Kulakovskiy et al.(2013)
ZN143_MOUSE.H11MO.0.A 		0.760 0.859
ZNF76
M04398_2.00 		Homo sapiens
NNHWCCCABAATGCAHYRCRN
NYGYRDTGCATTVTGGGWDNN		 SELEX
Yin et al.(2017)
ZNF76_eDBD_HT-SELEX 		0.759 0.846
ZNF76
M08278_2.00 		Homo sapiens
BCSCRNDGSMTBCTGGGARNT
ANYTCCCAGVAKSCHNYGSGV		 ChIP-seq
Schmitges et al.(2016)
P36508_1-7.RCADE 		0.759 0.846
ZNF76
M08856_2.00 		Homo sapiens
ACTMCMHYTCCCAGVRKSCHHY
RDDGSMYBCTGGGARDKGKAGT		 Misc
Kulakovskiy et al.(2013)
ZNF76_HUMAN.H11MO.0.C 		0.759 0.846
ZNF76
M04399_2.00 		Homo sapiens
NYTWCCCAYAATGCAHYRCDN
NHGYRDTGCATTRTGGGWARN		 SELEX
Yin et al.(2017)
ZNF76_eDBD_Methyl-HT-SELEX 		0.759 0.846
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_1970081 C2H2 ZF 50 69
estExt_fgenesh2_pg.C_1970081 C2H2 ZF 91 115
estExt_fgenesh2_pg.C_1970081 C2H2 ZF 121 145
estExt_fgenesh2_pg.C_1970081 C2H2 ZF 151 175
estExt_fgenesh2_pg.C_1970081 C2H2 ZF 181 205
estExt_fgenesh2_pg.C_1970081 C2H2 ZF 211 235
estExt_fgenesh2_pg.C_1970081 C2H2 ZF 241 264

Links

Other C2H2 ZF family TFs
Other Branchiostoma floridae TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sakowv30036637m.g Saccoglossus kowalevskii Sakowv30036637m.g I 0.794
Sakowv30044960m.g Saccoglossus kowalevskii Sakowv30044960m.g I 0.794
SMAR015659 Strigamia maritima SMAR015659 I 0.777
ENSLOCG00000011655 Lepisosteus oculatus ENSLOCG00000011655 I 0.773
Ocbimv22038914m.g Octopus bimaculoides Ocbimv22038914m.g I 0.769
znf76 Danio rerio ENSDARG00000013279 I 0.766
LotgiG222832 Lottia gigantea LotgiG222832 I 0.764
Alligator_sinensis_CCG020455.1 Alligator sinensis Alligator_sinensis_CCG020455.1 I 0.762
ENSAMEG00000003872 Ailuropoda melanoleuca ENSAMEG00000003872 I 0.761
ZNF143 Canis familiaris ENSCAFG00000007373 I 0.761
ZNF143 Callithrix jacchus ENSCJAG00000011327 I 0.761
ZNF143 Cavia porcellus ENSCPOG00000003109 I 0.761
ZNF143 Equus caballus ENSECAG00000018889 I 0.761
ZNF143 Erinaceus europaeus ENSEEUG00000000955 I 0.761
ENSFALG00000003698 Ficedula albicollis ENSFALG00000003698 I 0.761
ZNF143 Felis catus ENSFCAG00000002342 I 0.761
ZNF143 Homo sapiens ENSG00000166478 D 0.761
ZNF143 Loxodonta africana ENSLAFG00000004487 I 0.761
ZNF143 Microcebus murinus ENSMICG00000004353 I 0.761
ZNF143 Macaca mulatta ENSMMUG00000008758 I 0.761
ENSMPUG00000012796 Mustela putorius furo ENSMPUG00000012796 I 0.761
ZNF143 Otolemur garnettii ENSOGAG00000011518 I 0.761
ENSPANG00000002501 Papio anubis ENSPANG00000002501 I 0.761
ENSPPYG00000003495 Pongo abelii ENSPPYG00000003495 I 0.761
ENSPSIG00000009683 Pelodiscus sinensis ENSPSIG00000009683 I 0.761
ZNF143 Pan troglodytes ENSPTRG00000003349 I 0.761
ZNF76 Taeniopygia guttata ENSTGUG00000001745 I 0.761
ENSTSYG00000004324 Tarsius syrichta ENSTSYG00000004324 I 0.761
Alligator_sinensis_CCG018668.1 Alligator sinensis Alligator_sinensis_CCG018668.1 I 0.761
ENSP00000379847 Macaca fascicularis ENSP00000379847 I 0.761
Gfo_R002960 Geospiza fortis Gfo_R002960 I 0.761
ZNF143 Anolis carolinensis ENSACAG00000009338 I 0.760
ENSAPLG00000002385 Anas platyrhynchos ENSAPLG00000002385 I 0.760
ENSFALG00000000985 Ficedula albicollis ENSFALG00000000985 I 0.760
ZNF143 Gallus gallus ENSGALG00000005787 I 0.760
ENSMEUG00000003014 Macropus eugenii ENSMEUG00000003014 I 0.760
ZNF143 Meleagris gallopavo ENSMGAG00000006206 I 0.760
ZNF143 Myotis lucifugus ENSMLUG00000000213 I 0.760
ZNF143 Monodelphis domestica ENSMODG00000007909 I 0.760
Zfp143 Mus musculus ENSMUSG00000061079 D 0.760
ZNF143 Oryctolagus cuniculus ENSOCUG00000005226 I 0.760
ZNF143 Ochotona princeps ENSOPRG00000005466 I 0.760
ENSPSIG00000005652 Pelodiscus sinensis ENSPSIG00000005652 I 0.760
Zfp143 Rattus norvegicus ENSRNOG00000010087 I 0.760
ZNF143 Sorex araneus ENSSARG00000007780 I 0.760
ENSTGUG00000008153 Taeniopygia guttata ENSTGUG00000008153 I 0.760
Aan_R006576 Calypte anna Aan_R006576 I 0.760
Afo_R002092 Aptenodytes forsteri Afo_R002092 I 0.760
Afo_R014591 Aptenodytes forsteri Afo_R014591 I 0.760
Brh_R005520 Buceros rhinoceros Brh_R005520 I 0.760
Cmyd_10011173 Chelonia mydas Cmyd_10011173 I 0.760
Gfo_R011843 Geospiza fortis Gfo_R011843 I 0.760
Pvit_03784 Pogona vitticeps Pvit_03784 I 0.760
Tal_R001092 Tyto alba Tal_R001092 I 0.760
ENSAMEG00000000752 Ailuropoda melanoleuca ENSAMEG00000000752 I 0.759
ZNF76 Bos taurus ENSBTAG00000006170 I 0.759
ZNF76 Canis familiaris ENSCAFG00000001304 I 0.759
ZNF76 Choloepus hoffmanni ENSCHOG00000003197 I 0.759
ZNF76 Callithrix jacchus ENSCJAG00000015519 I 0.759
ZNF76 Cavia porcellus ENSCPOG00000007381 I 0.759
ENSCSAG00000009955 Chlorocebus sabaeus ENSCSAG00000009955 I 0.759
ZNF76 Dasypus novemcinctus ENSDNOG00000015856 I 0.759
ZNF76 Equus caballus ENSECAG00000014843 I 0.759
ZNF76 Felis catus ENSFCAG00000005893 I 0.759
ZNF76 Homo sapiens ENSG00000065029 D 0.759
ZNF76 Gorilla gorilla ENSGGOG00000014188 I 0.759
ENSGMOG00000001888 Gadus morhua ENSGMOG00000001888 I 0.759
ZNF76 Loxodonta africana ENSLAFG00000026071 I 0.759
ZNF76 Myotis lucifugus ENSMLUG00000008610 I 0.759
ZNF76 Macaca mulatta ENSMMUG00000023559 I 0.759
ZNF76 Monodelphis domestica ENSMODG00000013806 I 0.759
ENSMPUG00000003522 Mustela putorius furo ENSMPUG00000003522 I 0.759
Zfp523 Mus musculus ENSMUSG00000024220 I 0.759
ZNF76 Oryctolagus cuniculus ENSOCUG00000015630 I 0.759
ENSOPRG00000009136 Ochotona princeps ENSOPRG00000009136 I 0.759
ENSPANG00000021154 Papio anubis ENSPANG00000021154 I 0.759
ENSPFOG00000008911 Poecilia formosa ENSPFOG00000008911 I 0.759
ENSPPYG00000016525 Pongo abelii ENSPPYG00000016525 I 0.759
ZNF76 Pan troglodytes ENSPTRG00000018080 I 0.759
ZNF76 Pteropus vampyrus ENSPVAG00000008041 I 0.759
Zfp523 Rattus norvegicus ENSRNOG00000000501 I 0.759
ENSSHAG00000009934 Sarcophilus harrisii ENSSHAG00000009934 I 0.759
ZNF76 Sus scrofa ENSSSCG00000001537 I 0.759
ENSSTOG00000000256 Ictidomys tridecemlineatus ENSSTOG00000000256 I 0.759
ZNF76 Tursiops truncatus ENSTTRG00000009380 I 0.759
ENSXMAG00000005152 Xiphophorus maculatus ENSXMAG00000005152 I 0.759
ENSBTAP00000008112-D1 Bos grunniens ENSBTAP00000008112-D1 I 0.759
ENSP00000363064 Macaca fascicularis ENSP00000363064 I 0.759
Myotis_brandtii_ZNF76_10017771 Myotis brandtii Myotis_brandtii_ZNF76_10017771 I 0.759
Tal_R002540 Tyto alba Tal_R002540 I 0.759
ENSAMXG00000008869 Astyanax mexicanus ENSAMXG00000008869 I 0.758
znf143b Danio rerio ENSDARG00000041581 I 0.758
ENSLACG00000017669 Latimeria chalumnae ENSLACG00000017669 I 0.758
ENSLOCG00000003619 Lepisosteus oculatus ENSLOCG00000003619 I 0.758
ENSOARG00000012477 Ovis aries ENSOARG00000012477 I 0.758
znf143b Tetraodon nigroviridis ENSTNIG00000013739 I 0.758
znf143 Takifugu rubripes ENSTRUG00000009324 I 0.758
ZNF143 Tursiops truncatus ENSTTRG00000015353 I 0.758
ENSP00000379847-D1 Bos grunniens ENSP00000379847-D1 I 0.758
AAH73068 Xenopus laevis AAH73068 I 0.758
znf143 Xenopus tropicalis XB-GENE-1012504 I 0.758
ZNF143 Ornithorhynchus anatinus ENSOANG00000005853 I 0.757
ZNF76 Otolemur garnettii ENSOGAG00000002935 I 0.757
Myotis_brandtii_ZNF143_10021171 Myotis brandtii Myotis_brandtii_ZNF143_10021171 I 0.757
ENSAMXG00000003833 Astyanax mexicanus ENSAMXG00000003833 I 0.756
znf143b Gasterosteus aculeatus ENSGACG00000009776 I 0.756
ENSONIG00000015524 Oreochromis niloticus ENSONIG00000015524 I 0.756
znf143.S Xenopus laevis XB-GENE-1012509 I 0.756