CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSPFOG00000018596 *(Poecilia formosa)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	ENSPFOG00000018596	T214547_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Pknox2 M00468_2.00	Mus musculus	NNNGACRNNN	NNNYGTCNNN	PBM Berger et al.(2008) Pknox2_3077	0.865	0.982
PKNOX2 M03195_2.00	Homo sapiens	TGACAGSTGTCA	TGACASCTGTCA	SELEX Jolma et al.(2013) PKNOX2_1	0.865	0.982
Pknox2 M03270_2.00	Mus musculus	TGACAGSTGTCA	TGACASCTGTCA	SELEX Jolma et al.(2013) Pknox2_1	0.865	0.982
PKNOX2 M05246_2.00	Homo sapiens	TGACABVTGTCA	TGACABVTGTCA	SELEX Yin et al.(2017) PKNOX2_eDBD_HT-SELEX	0.865	0.982
PKNOX2 M05247_2.00	Homo sapiens	TGACASSTGTCA	TGACASSTGTCA	SELEX Yin et al.(2017) PKNOX2_eDBD_Methyl-HT-SELEX	0.865	0.982
Pknox1 M00399_2.00	Mus musculus	HGACRNNN	NNNYGTCD	PBM Berger et al.(2008) Pknox1_2364	0.865	0.945
PKNOX1 M03178_2.00	Homo sapiens	TGACAGSTGTCA	TGACASCTGTCA	SELEX Jolma et al.(2013) PKNOX1_1	0.865	0.945
PKNOX1 M05206_2.00	Homo sapiens	TGACASSTGTCA	TGACASSTGTCA	SELEX Yin et al.(2017) PKNOX1_eDBD_HT-SELEX	0.865	0.945
PKNOX1 M05208_2.00	Homo sapiens	TGACAGCTGTCA	TGACAGCTGTCA	SELEX Yin et al.(2017) PKNOX1_FL_HT-SELEX	0.865	0.945
PKNOX1 M09150_2.00	Homo sapiens	TGABTGRCRGV	BCYGYCAVTCA	Misc Kulakovskiy et al.(2013) PKNX1_HUMAN.H11MO.0.B	0.865	0.945
Pknox1 M09175_2.00	Mus musculus	TGABTGRCRGV	BCYGYCAVTCA	Misc Kulakovskiy et al.(2013) PKNX1_MOUSE.H11MO.0.A	0.865	0.945
PKNOX1 M10712_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PREP1_Q3	0.865	0.945
PKNOX1 M05207_2.00	Homo sapiens	YGWCASSTGWCR	YGWCASSTGWCR	SELEX Yin et al.(2017) PKNOX1_eDBD_Methyl-HT-SELEX	0.865	0.945
PKNOX1 M05209_2.00	Homo sapiens	TGACABVTGTCA	TGACABVTGTCA	SELEX Yin et al.(2017) PKNOX1_FL_Methyl-HT-SELEX	0.865	0.945
Meis1 M00407_2.00	Mus musculus	NTGACADNN	NNHTGTCAN	PBM Berger et al.(2008) Meis1_2335	0.751	0.727
Meis2 M00437_2.00	Mus musculus	NTGACANNN	NNNTGTCAN	PBM Berger et al.(2008) Mrg1_2246	0.751	0.727
Meis3 M00488_2.00	Mus musculus	NTGACANNN	NNNTGTCAN	PBM Berger et al.(2008) Mrg2_2302	0.751	0.727
MEIS1 M03165_2.00	Homo sapiens	NTGACAN	NTGTCAN	SELEX Jolma et al.(2013) MEIS1_1	0.751	0.727
MEIS2 M03147_2.00	Homo sapiens	WTGACAGSTGTCAM	KTGACASCTGTCAW	SELEX Jolma et al.(2013) MEIS2_1	0.751	0.727
MEIS2 M03148_2.00	Homo sapiens	DTGACAGS	SCTGTCAH	SELEX Jolma et al.(2013) MEIS2_2	0.751	0.727
Meis2 M03261_2.00	Mus musculus	NTGACAN	NTGTCAN	SELEX Jolma et al.(2013) Meis2_1	0.751	0.727
Meis2 M03262_2.00	Mus musculus	TGACAGSTGTCA	TGACASCTGTCA	SELEX Jolma et al.(2013) Meis2_2	0.751	0.727
Meis3 M03279_2.00	Mus musculus	NTGACAN	NTGTCAN	SELEX Jolma et al.(2013) Meis3_1	0.751	0.727
Meis3 M03280_2.00	Mus musculus	TGACAGSTGTCA	TGACASCTGTCA	SELEX Jolma et al.(2013) Meis3_2	0.751	0.727
MEIS2 M02740_2.00	Homo sapiens	TGACASSTGTC	GACASSTGTCA	SELEX Jolma et al.(2010) MEIS2_dimer	0.751	0.727
MEIS2 M02741_2.00	Homo sapiens	GGACAKNT	ANMTGTCC	SELEX Jolma et al.(2010) MEIS2_monomer	0.751	0.727
MEIS2 M05138_2.00	Homo sapiens	TGACASSTGTCA	TGACASSTGTCA	SELEX Yin et al.(2017) MEIS2_eDBD_HT-SELEX	0.751	0.727
MEIS2 M05140_2.00	Homo sapiens	TGACASSTGTCA	TGACASSTGTCA	SELEX Yin et al.(2017) MEIS2_FL_HT-SELEX	0.751	0.727
hth M06490_2.00	Drosophila melanogaster	TGACAK	MTGTCA	B1H Mathelier et al.(2014) MA0227.1	0.751	0.727
hth M06252_2.00	Drosophila melanogaster	TGTCA	TGACA	B1H Zhu et al.(2011) Hth_Cell_FBgn0001235	0.751	0.727
hth M06253_2.00	Drosophila melanogaster	NNTGACAD	HTGTCANN	B1H Zhu et al.(2011) hth_SOLEXA_2_FBgn0001235	0.751	0.727
hth M06254_2.00	Drosophila melanogaster	NTGACA	TGTCAN	B1H Zhu et al.(2011) Hth_SOLEXA_FBgn0001235	0.751	0.727
MEIS1 M09148_2.00	Homo sapiens	NTGATTDATDDB	VHHATHAATCAN	Misc Kulakovskiy et al.(2013) MEIS1_HUMAN.H11MO.0.A	0.751	0.727
MEIS2 M09143_2.00	Homo sapiens	HTGACAGBTKTBM	KVAMAVCTGTCAD	Misc Kulakovskiy et al.(2013) MEIS2_HUMAN.H11MO.0.B	0.751	0.727
Meis1 M09178_2.00	Mus musculus	NTGATTDATDDB	VHHATHAATCAN	Misc Kulakovskiy et al.(2013) MEIS1_MOUSE.H11MO.0.A	0.751	0.727
Meis2 M09189_2.00	Mus musculus	HTGACAGBTKTBM	KVAMAVCTGTCAD	Misc Kulakovskiy et al.(2013) MEIS2_MOUSE.H11MO.0.B	0.751	0.727
Meis1 M09568_2.00	Mus musculus	VBTGWCASNN	NNSTGWCAVB	Misc Heinz et al.(2010) MastCells-Meis1_GSE48085	0.751	0.727
MEIS1 M10709_2.00	Homo sapiens	NHNTGACAGNDN	NHNCTGTCANDN	Transfac Matys et al.(2006) V$MEIS1_01	0.751	0.727
MEIS1 M10710_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MEIS1_06	0.751	0.727
MEIS2 M05139_2.00	Homo sapiens	YGACASSYGHCR	YGDCRSSTGTCR	SELEX Yin et al.(2017) MEIS2_eDBD_Methyl-HT-SELEX	0.751	0.727
MEIS2 M05141_2.00	Homo sapiens	TGACASSTGTCA	TGACASSTGTCA	SELEX Yin et al.(2017) MEIS2_FL_Methyl-HT-SELEX	0.751	0.727
unc-62 M02185_2.00	Caenorhabditis elegans	NHDAHANNN	NNNTDTHDN	PBM Weirauch et al.(2014) pTH5781	0.738	0.655
Tgif1 M00500_2.00	Mus musculus	NNTGACANNN	NNNTGTCANN	PBM Berger et al.(2008) Tgif1_2342	0.631	0.527
TGIF1 M03223_2.00	Homo sapiens	TGACAGCTGTCA	TGACAGCTGTCA	SELEX Jolma et al.(2013) TGIF1_1	0.631	0.527
TGIF1 M05317_2.00	Homo sapiens	TGACAGSTGTCA	TGACASCTGTCA	SELEX Yin et al.(2017) TGIF1_eDBD_HT-SELEX	0.631	0.527
TGIF1 M09159_2.00	Homo sapiens	TGACAGS	SCTGTCA	Misc Kulakovskiy et al.(2013) TGIF1_HUMAN.H11MO.0.A	0.631	0.527
Tgif1 M09211_2.00	Mus musculus	TGACAGBNV	BNVCTGTCA	Misc Kulakovskiy et al.(2013) TGIF1_MOUSE.H11MO.0.A	0.631	0.527
TGIF1 M10740_2.00	Homo sapiens	WHNTGACARST	ASYTGTCANDW	Transfac Matys et al.(2006) V$TGIF_01	0.631	0.527
TGIF1 M05318_2.00	Homo sapiens	TGACAKVTGTCA	TGACABMTGTCA	SELEX Yin et al.(2017) TGIF1_eDBD_Methyl-HT-SELEX	0.631	0.527
Tgif2 M00521_2.00	Mus musculus	NNTGACANNN	NNNTGTCANN	PBM Berger et al.(2008) Tgif2_3451	0.631	0.509
TGIF2 M03123_2.00	Homo sapiens	TGACAGSTGTCA	TGACASCTGTCA	SELEX Jolma et al.(2013) TGIF2_1	0.631	0.509
TGIF2 M05032_2.00	Homo sapiens	TGACABVTGTCA	TGACABVTGTCA	SELEX Yin et al.(2017) TGIF2_eDBD_HT-SELEX	0.631	0.509
TGIF2 M05034_2.00	Homo sapiens	DTGACANN	NNTGTCAH	SELEX Yin et al.(2017) TGIF2_FL_HT-SELEX	0.631	0.509
TGIF2 M05033_2.00	Homo sapiens	TGWCABVTGWCA	TGWCABVTGWCA	SELEX Yin et al.(2017) TGIF2_eDBD_Methyl-HT-SELEX	0.631	0.509
TGIF2 M05035_2.00	Homo sapiens	DTGACANN	NNTGTCAH	SELEX Yin et al.(2017) TGIF2_FL_Methyl-HT-SELEX	0.631	0.509
achi M03860_2.00	Drosophila melanogaster	TGACAD	HTGTCA	SELEX Nitta et al.(2015) achi_1	0.620	0.491
achi M03861_2.00	Drosophila melanogaster	TGACAGMTGTCA	TGACAKCTGTCA	SELEX Nitta et al.(2015) achi_2	0.620	0.491
achi M03862_2.00	Drosophila melanogaster	TGACAGNNNNNNYGTCA	TGACRNNNNNNCTGTCA	SELEX Nitta et al.(2015) achi_3	0.620	0.491
vis M03859_2.00	Drosophila melanogaster	TGACAS	STGTCA	SELEX Nitta et al.(2015) vis_1	0.620	0.491
vis M06534_2.00	Drosophila melanogaster	TGACAB	BTGTCA	B1H Mathelier et al.(2014) MA0252.1	0.620	0.491
achi M06535_2.00	Drosophila melanogaster	TGACAG	CTGTCA	B1H Mathelier et al.(2014) MA0207.1	0.620	0.491
achi M06345_2.00	Drosophila melanogaster	TGTCADW	WHTGACA	B1H Zhu et al.(2011) Achi_Cell_FBgn0033749	0.620	0.491
achi M06346_2.00	Drosophila melanogaster	HTGACA	TGTCAD	B1H Zhu et al.(2011) Achi_SOLEXA_FBgn0033749	0.620	0.491
vis M06343_2.00	Drosophila melanogaster	TGTCA	TGACA	B1H Zhu et al.(2011) Vis_Cell_FBgn0033748	0.620	0.491
vis M06344_2.00	Drosophila melanogaster	TGTCAD	HTGACA	B1H Zhu et al.(2011) Vis_SOLEXA_FBgn0033748	0.620	0.491
TGIF2LX M03171_2.00	Homo sapiens	TGACAGSTGTCA	TGACASCTGTCA	SELEX Jolma et al.(2013) TGIF2LX_1	0.599	0.491
TGIF2LX M05191_2.00	Homo sapiens	TGACABVTGTCA	TGACABVTGTCA	SELEX Yin et al.(2017) TGIF2LX_eDBD_HT-SELEX	0.599	0.491
TGIF2LX M05193_2.00	Homo sapiens	TGACASSTGTCA	TGACASSTGTCA	SELEX Yin et al.(2017) TGIF2LX_FL_HT-SELEX	0.599	0.491
TGIF2LX M05192_2.00	Homo sapiens	TGACABVTGTCA	TGACABVTGTCA	SELEX Yin et al.(2017) TGIF2LX_eDBD_Methyl-HT-SELEX	0.599	0.491
TGIF2LX M05194_2.00	Homo sapiens	TGACASSTGTCA	TGACASSTGTCA	SELEX Yin et al.(2017) TGIF2LX_FL_Methyl-HT-SELEX	0.599	0.491
TGIF2LY M05313_2.00	Homo sapiens	TGACABVTGTCA	TGACABVTGTCA	SELEX Yin et al.(2017) TGIF2LY_eDBD_HT-SELEX	0.599	0.473
TGIF2LY M05314_2.00	Homo sapiens	YGACABVTGTCR	YGACABVTGTCR	SELEX Yin et al.(2017) TGIF2LY_eDBD_Methyl-HT-SELEX	0.599	0.473
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSPFOP00000018711	Homeodomain	293	350	KNKRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTSLTLLQVNNWFINARRRI

Links
Other Homeodomain family TFs
Other *Poecilia formosa* TFs

798 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL010903	Aedes aegypti	AAEL010903	N	0.000
AAH41216	Xenopus laevis	AAH41216	N	0.000
ACAC_0000207501	Angiostrongylus cantonensis	ACAC_0000207501	N	0.000
ACEP21543	Atta cephalotes	ACEP21543	N	0.000
ACYPI008028	Acyrthosiphon pisum	ACYPI008028	N	0.000
ALUE_0000987201	Ascaris lumbricoides	ALUE_0000987201	N	0.000
ANCCAN_03785	Ancylostoma caninum	ANCCAN_03785	N	0.000
ANCCAN_09575	Ancylostoma caninum	ANCCAN_09575	N	0.000
ANCCEY_02937	Ancylostoma ceylanicum	ANCCEY_02937	N	0.000
ANCDUO_12071	Ancylostoma duodenale	ANCDUO_12071	N	0.000
ASIM_0001578601	Anisakis simplex	ASIM_0001578601	N	0.000
ASIM_0001639001	Anisakis simplex	ASIM_0001639001	N	0.000
ASU_02248	Ascaris suum	ASU_02248	N	0.000
BGIBMGA009228	Bombyx mori	BGIBMGA009228	N	0.000
Bm12451	Brugia malayi	Bm12451	N	0.000
Bm7076	Brugia malayi	Bm7076	N	0.000
CapteG156119	Capitella teleta	CapteG156119	N	0.000
CBG09815	Caenorhabditis briggsae	CBG09815	N	0.000
CBN09141	Caenorhabditis brenneri	CBN09141	N	0.000
Cflo_00654--XP_395543.3_APIME	Camponotus floridanus	Cflo_00654--XP_395543.3_APIME	N	0.000
CJA12494	Caenorhabditis japonica	CJA12494	N	0.000
CJA31291	Caenorhabditis japonica	CJA31291	N	0.000
CLEC001104	Cimex lectularius	CLEC001104	N	0.000
CLEC009203	Cimex lectularius	CLEC009203	N	0.000
CPIJ007400	Culex quinquefasciatus	CPIJ007400	N	0.000
CPIJ018416	Culex quinquefasciatus	CPIJ018416	N	0.000
CpipJ_CPIJ007400	Culex pipiens	CpipJ_CPIJ007400	N	0.000
CpipJ_CPIJ018416	Culex pipiens	CpipJ_CPIJ018416	N	0.000
CRE25200	Caenorhabditis remanei	CRE25200	N	0.000
DAPPUDRAFT_305068	Daphnia pulex	DAPPUDRAFT_305068	N	0.000
DME_0000063901	Dracunculus medinensis	DME_0000063901	N	0.000
EEL_0000522201	Elaeophora elaphi	EEL_0000522201	N	0.000
ENSCJAG00000006608	Callithrix jacchus	ENSCJAG00000006608	N	0.000
SMARCE1	Gasterosteus aculeatus	ENSGACG00000018114	N	0.000
ENSGGOG00000024929	Gorilla gorilla	ENSGGOG00000024929	N	0.000
ENSGMOG00000002045	Gadus morhua	ENSGMOG00000002045	N	0.000
ENSOCUG00000016848	Oryctolagus cuniculus	ENSOCUG00000016848	N	0.000
ENSONIG00000006293	Oreochromis niloticus	ENSONIG00000006293	N	0.000
smarce1	Oryzias latipes	ENSORLG00000018629	N	0.000
ENSPFOG00000009890	Poecilia formosa	ENSPFOG00000009890	N	0.000
ENSPFOG00000019561	Poecilia formosa	ENSPFOG00000019561	N	0.000
ENSPPYG00000012585	Pongo abelii	ENSPPYG00000012585	N	0.000
AC123471.1	Rattus norvegicus	ENSRNOG00000018377	N	0.000
smarce1	Tetraodon nigroviridis	ENSTNIG00000014009	N	0.000
smarce1	Takifugu rubripes	ENSTRUG00000012899	N	0.000
ENSXMAG00000002642	Xiphophorus maculatus	ENSXMAG00000002642	N	0.000
EVEC_0000378901	Enterobius vermicularis	EVEC_0000378901	N	0.000
GB50847	Apis mellifera	GB50847	N	0.000
GPLIN_000239300	Globodera pallida	GPLIN_000239300	N	0.000
Hba_20635	Heterorhabditis bacteriophora	Hba_20635	N	0.000
HCOI00022200	Haemonchus contortus	HCOI00022200	N	0.000
HCOI00569400	Haemonchus contortus	HCOI00569400	N	0.000
HelroG188630	Helobdella robusta	HelroG188630	N	0.000
HHAL002088-PA	Halyomorpha halys	HHAL002088-PA	N	0.000
HHAL007378-PA	Halyomorpha halys	HHAL007378-PA	N	0.000
HMEL010720	Heliconius melpomene	HMEL010720	N	0.000
HPBE_0000083501	Heligmosomoides bakeri	HPBE_0000083501	N	0.000
HPLM_0001658301	Haemonchus placei	HPLM_0001658301	N	0.000
Hsal_01302--XP_395543.3_APIME	Harpegnathos saltator	Hsal_01302--XP_395543.3_APIME	N	0.000
ISCW021016	Ixodes scapularis	ISCW021016	N	0.000
KGM_12870	Danaus plexippus	KGM_12870	N	0.000
L596_g22461	Steinernema carpocapsae	L596_g22461	N	0.000
L798_00593	Zootermopsis nevadensis	L798_00593	N	0.000
L889_g3706	Steinernema feltiae	L889_g3706	N	0.000
L892_g30100	Steinernema scapterisci	L892_g30100	N	0.000
L898_g375	Steinernema monticolum	L898_g375	N	0.000
LDEC003494	Leptinotarsa decemlineata	LDEC003494	N	0.000
LLOJ006040	Lutzomyia longipalpis	LLOJ006040	N	0.000
LOAG_01279	Loa loa	LOAG_01279	N	0.000
LotgiG111061	Lottia gigantea	LotgiG111061	N	0.000
maker-nMf.1.1.scaf01126-augustus-gene-0.13	Meloidogyne floridensis	maker-nMf.1.1.scaf01126-augustus-gene-0.13	N	0.000
MhA1_Contig1809.frz3.gene8	Meloidogyne hapla	MhA1_Contig1809.frz3.gene8	N	0.000
Minc14081	Meloidogyne incognita	Minc14081	N	0.000
nAv.1.0.1.g03900	Acanthocheilonema viteae	nAv.1.0.1.g03900	N	0.000
nDi.2.2.2.g02092	Dirofilaria immitis	nDi.2.2.2.g02092	N	0.000
NECAME_16117	Necator americanus	NECAME_16117	N	0.000
NEMVEDRAFT_v1g177453	Nematostella vectensis	NEMVEDRAFT_v1g177453	N	0.000
nLs.2.1.2.g01047	Litomosoides sigmodontis	nLs.2.1.2.g01047	N	0.000
nOo.2.0.1.g01360	Onchocerca ochengi	nOo.2.0.1.g01360	N	0.000
NV11999	Nasonia vitripennis	NV11999	N	0.000
OESDEN_12607	Oesophagostomum dentatum	OESDEN_12607	N	0.000
OESDEN_21929	Oesophagostomum dentatum	OESDEN_21929	N	0.000
OFLC_0001285101	Onchocerca flexuosa	OFLC_0001285101	N	0.000
PPA02543	Pristionchus pacificus	PPA02543	N	0.000
PPAI002058	Phlebotomus papatasi	PPAI002058	N	0.000
Sakowv30017721m.g	Saccoglossus kowalevskii	Sakowv30017721m.g	N	0.000
scaffold237-EXSNAP2012.36	Pristionchus exspectatus	scaffold237-EXSNAP2012.36	N	0.000
SMAR004982	Strigamia maritima	SMAR004982	N	0.000
SMUV_0000644601	Syphacia muris	SMUV_0000644601	N	0.000
snap_masked-nMf.1.1.scaf27159-processed-gene-0.2	Meloidogyne floridensis	snap_masked-nMf.1.1.scaf27159-processed-gene-0.2	N	0.000
SVUK_0000819801	Strongylus vulgaris	SVUK_0000819801	N	0.000
TC007745	Tribolium castaneum	TC007745	N	0.000
TCLT_0000145301	Thelazia callipaeda	TCLT_0000145301	N	0.000
TELCIR_14354	Teladorsagia circumcincta	TELCIR_14354	N	0.000
TriadG53566	Trichoplax adhaerens	TriadG53566	N	0.000
WBGene00245293	Onchocerca volvulus	WBGene00245293	N	0.000
WUBG_07283	Wuchereria bancrofti	WUBG_07283	N	0.000
YQE_02381	Dendroctonus ponderosae	YQE_02381	N	0.000

ENSPFOG00000018596 (Poecilia formosa) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

798 Related TFs

ENSPFOG00000018596 **(Poecilia formosa)
Homeodomain**