CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ONIVA04G18550 *(Oryza nivara)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	ONIVA04G18550	T221651_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.754	0.607
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.754	0.607
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.749	0.643
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.734	0.625
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.734	0.625
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.734	0.625
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.734	0.625
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.716	0.589
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.716	0.589
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.716	0.589
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.716	0.589
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.704	0.607
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.704	0.607
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.704	0.607
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.704	0.607
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.702	0.571
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.702	0.571
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.701	0.571
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.701	0.571
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.696	0.554
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.696	0.554
ATHB-7 M02043_2.00	Arabidopsis thaliana	NHWTGATTGN	NCAATCAWDN	PBM Weirauch et al.(2014) pTH8090	0.688	0.714
ATHB-7 M06911_2.00	Arabidopsis thaliana	NHYCAATCATTSW	WSAATGATTGRDN	Dap-seq OMalley et al.(2016) ATHB7_col_a	0.688	0.714
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.615	0.589
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.615	0.589
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ONIVA04G18550.1	Homeodomain	72	128	ERKRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRS

Links
Other Homeodomain family TFs
Other *Oryza nivara* TFs

808 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
EAF1B	Arabidopsis thaliana	AT3G24870	N	0.000
EAF1A	Arabidopsis thaliana	AT3G24880	N	0.000
BGIOSGA017449	Oryza indica	BGIOSGA017449	N	0.000
BGIOSGA027556	Oryza indica	BGIOSGA027556	N	0.000
Bostr.19424s0133	Boechera stricta	Bostr.19424s0133	N	0.000
BRADI2G14372	Brachypodium distachyon	BRADI2G14372	N	0.000
BRADI2G41720	Brachypodium distachyon	BRADI2G41720	N	0.000
cassava349.valid.m1	Manihot esculenta	cassava349.valid.m1	N	0.000
chr1.LjT36F23.70.nd	Lotus japonicus	chr1.LjT36F23.70.nd	N	0.000
Ciclev10018446m.g	Citrus clementina	Ciclev10018446m.g	N	0.000
Cla015187	Citrullus lanatus	Cla015187	N	0.000
Cucsa.078210	Cucumis sativus	Cucsa.078210	N	0.000
Eucgr.H00795	Eucalyptus grandis	Eucgr.H00795	N	0.000
evm.TU.supercontig_8.144	Carica papaya	evm.TU.supercontig_8.144	N	0.000
fgenesh2_kg.3__2706__AT3G24880.1	Arabidopsis lyrata	fgenesh2_kg.3__2706__AT3G24880.1	N	0.000
gene17608-v1.0-hybrid	Fragaria vesca	gene17608-v1.0-hybrid	N	0.000
GLYMA08G46710	Glycine max	GLYMA08G46710	N	0.000
GLYMA18G36628	Glycine max	GLYMA18G36628	N	0.000
Gorai.004G226000	Gossypium raimondii	Gorai.004G226000	N	0.000
Gorai.007G155000	Gossypium raimondii	Gorai.007G155000	N	0.000
GRMZM2G018048	Zea mays	GRMZM2G018048	N	0.000
GRMZM2G350684	Zea mays	GRMZM2G350684	N	0.000
GSMUA_Achr1G21080_001	Musa acuminata	GSMUA_Achr1G21080_001	N	0.000
LPERR11G18970	Leersia perrieri	LPERR11G18970	N	0.000
MDP0000155726	Malus domestica	MDP0000155726	N	0.000
MDP0000250529	Malus domestica	MDP0000250529	N	0.000
MLOC_60761	Hordeum vulgare	MLOC_60761	N	0.000
MTR_7g056603	Medicago truncatula	MTR_7g056603	N	0.000
OB01G30180	Oryza brachyantha	OB01G30180	N	0.000
OBART05G28000	Oryza barthii	OBART05G28000	N	0.000
OBART08G04660	Oryza barthii	OBART08G04660	N	0.000
OGLUM05G29460	Oryza glumaepatula	OGLUM05G29460	N	0.000
OGLUM08G04910	Oryza glumaepatula	OGLUM08G04910	N	0.000
OLONG_007975	Oryza longistaminata	OLONG_007975	N	0.000
OLONG_015531	Oryza longistaminata	OLONG_015531	N	0.000
OMERI05G23880	Oryza meridionalis	OMERI05G23880	N	0.000
OMERI08G04670	Oryza meridionalis	OMERI08G04670	N	0.000
ONIVA05G29890	Oryza nivara	ONIVA05G29890	N	0.000
ONIVA08G04510	Oryza nivara	ONIVA08G04510	N	0.000
OPUNC05G25580	Oryza punctata	OPUNC05G25580	N	0.000
OPUNC08G04510	Oryza punctata	OPUNC08G04510	N	0.000
orange1.1g000147m.g	Citrus sinensis	orange1.1g000147m.g	N	0.000
ORUFI05G29980	Oryza rufipogon	ORUFI05G29980	N	0.000
ORUFI08G05170	Oryza rufipogon	ORUFI08G05170	N	0.000
OS08G0177300	Oryza sativa	OS08G0177300	N	0.000
Pavir.J00429	Panicum virgatum	Pavir.J00429	N	0.000
Pavir.J03231	Panicum virgatum	Pavir.J03231	N	0.000
Pavir.J18859	Panicum virgatum	Pavir.J18859	N	0.000
PDK_20s1355591g002	Phoenix dactylifera	PDK_20s1355591g002	N	0.000
PK23540.1	Cannabis sativa	PK23540.1	N	0.000
POPTR_0002s24490	Populus trichocarpa	POPTR_0002s24490	N	0.000
POPTR_0014s19020	Populus trichocarpa	POPTR_0014s19020	N	0.000
SapurV1A.0135s0340	Salix purpurea	SapurV1A.0135s0340	N	0.000
SapurV1A.0342s0100	Salix purpurea	SapurV1A.0342s0100	N	0.000
Sb03g025920	Sorghum bicolor	Sb03g025920	N	0.000
Si000015m.g	Setaria italica	Si000015m.g	N	0.000
Si020947m.g	Setaria italica	Si020947m.g	N	0.000
Solyc06g083420.1	Solanum lycopersicum	Solyc06g083420.1	N	0.000
TCM_002924	Theobroma cacao	TCM_002924	N	0.000
Thhalv10002368m.g	Eutrema salsugineum	Thhalv10002368m.g	N	0.000
Traes_1DL_7773A9BFB	Triticum aestivum	Traes_1DL_7773A9BFB	N	0.000
Traes_3AL_06889C77D	Triticum aestivum	Traes_3AL_06889C77D	N	0.000
Traes_3DL_FC1A52B36	Triticum aestivum	Traes_3DL_FC1A52B36	N	0.000
TRIUR3_17785	Triticum urartu	TRIUR3_17785	N	0.000
TRIUR3_27363	Triticum urartu	TRIUR3_27363	N	0.000
VIT_07s0005g06680	Vitis vinifera	VIT_07s0005g06680	N	0.000

ONIVA04G18550 (Oryza nivara) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

808 Related TFs

ONIVA04G18550 **(Oryza nivara)
Homeodomain**