ORGLA03G0253300 (Oryza glaberrima)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ORGLA03G0253300 T221828_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.866 0.964
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.866 0.964
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.866 0.964
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.861 0.929
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.861 0.929
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA03G0253300.1 Homeodomain 31 90

Links

Other Homeodomain family TFs
Other Oryza glaberrima TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009572 Calypte anna Aan_R009572 I
Afo_R013462 Aptenodytes forsteri Afo_R013462 I
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I
VDR Anolis carolinensis ENSACAG00000013485 I
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I
ENSAMEG00000015383 Ailuropoda melanoleuca ENSAMEG00000015383 I
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I
NR1I3 Bos taurus ENSBTAG00000009215 I
VDR Bos taurus ENSBTAG00000016414 I
NR1I2 Bos taurus ENSBTAG00000019557 I
VDR Canis familiaris ENSCAFG00000009103 I
NR1I2 Canis familiaris ENSCAFG00000011094 I
NR1I3 Canis familiaris ENSCAFG00000012921 I
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I
NR1I3 Callithrix jacchus ENSCJAG00000004783 I
VDR Callithrix jacchus ENSCJAG00000015018 I
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I
NR1I3 Cavia porcellus ENSCPOG00000015331 I
ENSCSAG00000002676 Chlorocebus sabaeus ENSCSAG00000002676 I
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I
vdrb Danio rerio ENSDARG00000070721 I
VDR Dasypus novemcinctus ENSDNOG00000039161 I
NR1I3 Dasypus novemcinctus ENSDNOG00000045179 I
ENSDORG00000001701 Dipodomys ordii ENSDORG00000001701 I
VDR Equus caballus ENSECAG00000015822 I
NR1I3 Equus caballus ENSECAG00000020930 I
NR1I3 Erinaceus europaeus ENSEEUG00000004981 I
VDR Erinaceus europaeus ENSEEUG00000011116 I
NR1I3 Felis catus ENSFCAG00000000497 I
VDR Felis catus ENSFCAG00000024594 I
VDR Homo sapiens ENSG00000111424 D
NR1I3 Homo sapiens ENSG00000143257 D
vdra Gasterosteus aculeatus ENSGACG00000004763 I
vdrb Gasterosteus aculeatus ENSGACG00000007975 I
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D
NR1I3 Gorilla gorilla ENSGGOG00000005724 I
VDR Gorilla gorilla ENSGGOG00000016473 I
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I
NR1I3 Loxodonta africana ENSLAFG00000001180 I
VDR Loxodonta africana ENSLAFG00000006418 I
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I
ENSMEUG00000001987 Macropus eugenii ENSMEUG00000001987 I
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I
VDR Meleagris gallopavo ENSMGAG00000004846 I
NR5A1 Meleagris gallopavo ENSMGAG00000008342 I
VDR Microcebus murinus ENSMICG00000009017 I
VDR Myotis lucifugus ENSMLUG00000000912 I
NR1I2 Myotis lucifugus ENSMLUG00000002877 I
VDR Macaca mulatta ENSMMUG00000006727 I
NR1I3 Macaca mulatta ENSMMUG00000018128 I
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I
NR1I3 Monodelphis domestica ENSMODG00000005089 I
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I
ENSMPUG00000014388 Mustela putorius furo ENSMPUG00000014388 I
Nr1i3 Mus musculus ENSMUSG00000005677 D
Vdr Mus musculus ENSMUSG00000022479 D
ENSNLEG00000014287 Nomascus leucogenys ENSNLEG00000014287 I
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I
ENSOARG00000009965 Ovis aries ENSOARG00000009965 I
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I
NR1I3 Oryctolagus cuniculus ENSOCUG00000013537 I
VDR Oryctolagus cuniculus ENSOCUG00000027507 I
VDR Otolemur garnettii ENSOGAG00000005480 I
NR1I2 Otolemur garnettii ENSOGAG00000006017 I
NR1I3 Otolemur garnettii ENSOGAG00000013738 I
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I
NR1I3 Ochotona princeps ENSOPRG00000003455 I
vdralpha Oryzias latipes ENSORLG00000001063 I
vdr Oryzias latipes ENSORLG00000016402 I
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I
ENSP00000356959 Macaca fascicularis ENSP00000356959 I
ENSP00000356959-D1 Bos grunniens ENSP00000356959-D1 I
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I
ENSPANG00000014194 Papio anubis ENSPANG00000014194 I
NR1I3 Procavia capensis ENSPCAG00000013933 I
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I
NR1I3 Pan troglodytes ENSPTRG00000001582 I
NR6A1 Pan troglodytes ENSPTRG00000021357 I
NR1I3 Pteropus vampyrus ENSPVAG00000005540 I
VDR Pteropus vampyrus ENSPVAG00000011085 I
Nr1i3 Rattus norvegicus ENSRNOG00000003260 I
Vdr Rattus norvegicus ENSRNOG00000054420 I
NR1I3 Sorex araneus ENSSARG00000002684 I
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I
ENSSHAG00000016687 Sarcophilus harrisii ENSSHAG00000016687 I
NR1I3 Sus scrofa ENSSSCG00000006353 I
NR1I2 Sus scrofa ENSSSCG00000011890 I
VDR Sus scrofa ENSSSCG00000020864 I
ENSSTOG00000003818 Ictidomys tridecemlineatus ENSSTOG00000003818 I
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I
VDR Tupaia belangeri ENSTBEG00000005717 I
VDR Taeniopygia guttata ENSTGUG00000017093 I
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I
vdrb Takifugu rubripes ENSTRUG00000011576 I
vdra Takifugu rubripes ENSTRUG00000011907 I
ENSTSYG00000003712 Tarsius syrichta ENSTSYG00000003712 I
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I
NR1I3 Tursiops truncatus ENSTTRG00000009227 I
VDR Tursiops truncatus ENSTTRG00000012578 I
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I
Gfo_R005027 Geospiza fortis Gfo_R005027 I
HelroG108893 Helobdella robusta HelroG108893 I
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I
NEMVEDRAFT_v1g165424 Nematostella vectensis NEMVEDRAFT_v1g165424 I
Ogr03312 Ophisaurus gracilis Ogr03312 I
Pvit_07440 Pogona vitticeps Pvit_07440 I
Pvit_09404 Pogona vitticeps Pvit_09404 I
Pvit_09406 Pogona vitticeps Pvit_09406 I
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I
nr1i2.L Xenopus laevis XB-GENE-17336519 I
vdr Xenopus tropicalis XB-GENE-486505 I
vdr.S Xenopus laevis XB-GENE-864847 I
nr1i2.S Xenopus laevis XB-GENE-865343 I