NR1I3 (Oryctolagus cuniculus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSOCUG00000013537 T304102_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nr1i3
M09302_2.00 		Mus musculus
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C 		0.986 0.843
NR1I3
M03924_2.00 		Homo sapiens
RGKDYRNNNNRGKKYR
YRMMCYNNNNYRHMCY		 SELEX
Nitta et al.(2015)
NR1I3_1 		0.968 0.843
NR1I3
M05619_2.00 		Homo sapiens
WDAGTTCAH
DTGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX 		0.968 0.843
NR1I3
M09281_2.00 		Homo sapiens
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C 		0.968 0.843
NR1I3
M05620_2.00 		Homo sapiens
WDAGTTCRN
NYGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX 		0.968 0.843
ENSGALG00000028624
M02398_2.00 		Gallus gallus
GRGKTCAH
DTGAMCYC		 PBM
Weirauch et al.(2014)
pTH6492 		0.868 0.686
VDR
M03363_2.00 		Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC		 SELEX
Jolma et al.(2013)
VDR_1 		0.864 0.586
Vdr
M03429_2.00 		Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY		 SELEX
Jolma et al.(2013)
Vdr_1 		0.864 0.586
VDR
M05877_2.00 		Homo sapiens
HRRGTTCA
TGAACYYD		 SMiLE-seq
Isakova et al.(2017)
VDR 		0.864 0.586
VDR
M09269_2.00 		Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A 		0.864 0.586
Vdr
M09315_2.00 		Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A 		0.864 0.586
VDR
M09606_2.00 		Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN		 Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484 		0.864 0.586
VDR
M11116_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q3 		0.864 0.586
VDR
M11117_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6_01 		0.864 0.586
VDR
M11118_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6 		0.864 0.586
ENSPMAG00000000180
M02403_2.00 		Petromyzon marinus
RGKWCRN
NYGWMCY		 PBM
Weirauch et al.(2014)
pTH5509 		0.833 0.600
NR1I2
M03925_2.00 		Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY		 SELEX
Nitta et al.(2015)
NR1I2_1 		0.784 0.600
NR1I2
M05625_2.00 		Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX 		0.784 0.600
NR1I2
M09283_2.00 		Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C 		0.784 0.600
NR1I2
M05626_2.00 		Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX 		0.784 0.600
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000011646 Nuclear receptor 9 78
ENSOCUP00000017085 Nuclear receptor 9 79

Links

Other Nuclear receptor family TFs
Other Oryctolagus cuniculus TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NR1I3 Ochotona princeps ENSOPRG00000003455 I 0.993
NR1I3 Equus caballus ENSECAG00000020930 I 0.991
NR1I3 Loxodonta africana ENSLAFG00000001180 I 0.991
ENSMPUG00000014388 Mustela putorius furo ENSMPUG00000014388 I 0.991
NR1I3 Procavia capensis ENSPCAG00000013933 I 0.991
NR1I3 Bos taurus ENSBTAG00000009215 I 0.990
NR1I3 Canis familiaris ENSCAFG00000012921 I 0.990
NR1I3 Sus scrofa ENSSSCG00000006353 I 0.990
ENSP00000356959-D1 Bos grunniens ENSP00000356959-D1 I 0.990
NR1I3 Monodelphis domestica ENSMODG00000005089 I 0.988
NR1I3 Pteropus vampyrus ENSPVAG00000005540 I 0.988
NR1I3 Dasypus novemcinctus ENSDNOG00000045179 I 0.987
NR1I3 Felis catus ENSFCAG00000000497 I 0.987
ENSMEUG00000001987 Macropus eugenii ENSMEUG00000001987 I 0.987
NR1I3 Otolemur garnettii ENSOGAG00000013738 I 0.987
ENSDORG00000001701 Dipodomys ordii ENSDORG00000001701 I 0.986
Nr1i3 Mus musculus ENSMUSG00000005677 D 0.986
Nr1i3 Rattus norvegicus ENSRNOG00000003260 I 0.986
NR1I3 Erinaceus europaeus ENSEEUG00000004981 I 0.985
NR1I3 Sorex araneus ENSSARG00000002684 I 0.985
ENSSHAG00000016687 Sarcophilus harrisii ENSSHAG00000016687 I 0.985
ENSOARG00000009965 Ovis aries ENSOARG00000009965 I 0.981
ENSSTOG00000003818 Ictidomys tridecemlineatus ENSSTOG00000003818 I 0.980
ENSAMEG00000015383 Ailuropoda melanoleuca ENSAMEG00000015383 I 0.976
NR1I3 Cavia porcellus ENSCPOG00000015331 I 0.976
NR1I3 Callithrix jacchus ENSCJAG00000004783 I 0.971
NR1I3 Homo sapiens ENSG00000143257 D 0.968
ENSNLEG00000014287 Nomascus leucogenys ENSNLEG00000014287 I 0.968
NR1I3 Pan troglodytes ENSPTRG00000001582 I 0.968
ENSCSAG00000002676 Chlorocebus sabaeus ENSCSAG00000002676 I 0.967
NR1I3 Macaca mulatta ENSMMUG00000018128 I 0.967
ENSPANG00000014194 Papio anubis ENSPANG00000014194 I 0.967
ENSP00000356959 Macaca fascicularis ENSP00000356959 I 0.967
NR1I3 Gorilla gorilla ENSGGOG00000005724 I 0.962
ENSTSYG00000003712 Tarsius syrichta ENSTSYG00000003712 I 0.960
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.926
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.922
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.922
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.903
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.902
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.884
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.880
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.877
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.875
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.873
NR1I3 Tursiops truncatus ENSTTRG00000009227 I 0.872
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.868
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.868
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.866
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.866
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.866
Aan_R009572 Calypte anna Aan_R009572 I 0.866
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.866
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.866
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.864
VDR Bos taurus ENSBTAG00000016414 I 0.864
VDR Canis familiaris ENSCAFG00000009103 I 0.864
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.864
VDR Callithrix jacchus ENSCJAG00000015018 I 0.864
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.864
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.864
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.864
VDR Equus caballus ENSECAG00000015822 I 0.864
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.864
VDR Felis catus ENSFCAG00000024594 I 0.864
VDR Homo sapiens ENSG00000111424 D 0.864
VDR Gorilla gorilla ENSGGOG00000016473 I 0.864
VDR Loxodonta africana ENSLAFG00000006418 I 0.864
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.864
VDR Microcebus murinus ENSMICG00000009017 I 0.864
VDR Myotis lucifugus ENSMLUG00000000912 I 0.864
VDR Macaca mulatta ENSMMUG00000006727 I 0.864
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.864
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.864
Vdr Mus musculus ENSMUSG00000022479 D 0.864
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.864
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.864
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.864
VDR Otolemur garnettii ENSOGAG00000005480 I 0.864
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.864
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.864
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.864
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.864
VDR Sus scrofa ENSSSCG00000020864 I 0.864
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.864
VDR Tupaia belangeri ENSTBEG00000005717 I 0.864
VDR Tursiops truncatus ENSTTRG00000012578 I 0.864
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.864
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.864
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.864
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.856
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.848
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.835
vdrb Danio rerio ENSDARG00000070721 I 0.835
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.835
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.835
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.835
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.835
vdralpha Oryzias latipes ENSORLG00000001063 I 0.835
vdr Oryzias latipes ENSORLG00000016402 I 0.835
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.835
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.835
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.835
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.835
vdra Takifugu rubripes ENSTRUG00000011907 I 0.835
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.835
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.835
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.833
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.833
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.833
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.830
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.830
VDR Anolis carolinensis ENSACAG00000013485 I 0.825
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.825
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.825
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.822
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.812
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.812
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.811
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.801
NEMVEDRAFT_v1g165424 Nematostella vectensis NEMVEDRAFT_v1g165424 I 0.801
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.801
NR6A1 Pan troglodytes ENSPTRG00000021357 I 0.796
NR5A1 Meleagris gallopavo ENSMGAG00000008342 I 0.794
vdr Xenopus tropicalis XB-GENE-486505 I 0.794
vdr.S Xenopus laevis XB-GENE-864847 I 0.794
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.784
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.784
NR1I2 Equus caballus ENSECAG00000008728 I 0.784
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.784
NR1I2 Felis catus ENSFCAG00000006092 I 0.784
NR1I2 Homo sapiens ENSG00000144852 D 0.784
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.784
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.784
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.784
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.784
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.784
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.784
nr1i2 Danio rerio ENSDARG00000029766 I 0.781
HelroG108893 Helobdella robusta HelroG108893 I 0.772
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.767
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.762
NR1I2 Bos taurus ENSBTAG00000019557 I 0.750
vdr-a Ciona intestinalis ENSCING00000020740 I 0.750
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.750
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.750
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.749
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.748