NR1I3 (Cavia porcellus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSCPOG00000015331 T302776_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nr1i3
M09302_2.00 		Mus musculus
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C 		0.978 0.871
NR1I3
M03924_2.00 		Homo sapiens
RGKDYRNNNNRGKKYR
YRMMCYNNNNYRHMCY		 SELEX
Nitta et al.(2015)
NR1I3_1 		0.951 0.900
NR1I3
M05619_2.00 		Homo sapiens
WDAGTTCAH
DTGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX 		0.951 0.900
NR1I3
M09281_2.00 		Homo sapiens
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C 		0.951 0.900
NR1I3
M05620_2.00 		Homo sapiens
WDAGTTCRN
NYGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX 		0.951 0.900
ENSGALG00000028624
M02398_2.00 		Gallus gallus
GRGKTCAH
DTGAMCYC		 PBM
Weirauch et al.(2014)
pTH6492 		0.870 0.700
VDR
M03363_2.00 		Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC		 SELEX
Jolma et al.(2013)
VDR_1 		0.857 0.643
Vdr
M03429_2.00 		Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY		 SELEX
Jolma et al.(2013)
Vdr_1 		0.857 0.643
VDR
M05877_2.00 		Homo sapiens
HRRGTTCA
TGAACYYD		 SMiLE-seq
Isakova et al.(2017)
VDR 		0.857 0.643
VDR
M09269_2.00 		Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A 		0.857 0.643
Vdr
M09315_2.00 		Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A 		0.857 0.643
VDR
M09606_2.00 		Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN		 Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484 		0.857 0.643
VDR
M11116_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q3 		0.857 0.643
VDR
M11117_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6_01 		0.857 0.643
VDR
M11118_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6 		0.857 0.643
NR1I2
M03925_2.00 		Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY		 SELEX
Nitta et al.(2015)
NR1I2_1 		0.836 0.600
NR1I2
M05625_2.00 		Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX 		0.836 0.600
NR1I2
M09283_2.00 		Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C 		0.836 0.600
NR1I2
M05626_2.00 		Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX 		0.836 0.600
ENSPMAG00000000180
M02403_2.00 		Petromyzon marinus
RGKWCRN
NYGWMCY		 PBM
Weirauch et al.(2014)
pTH5509 		0.824 0.643
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000013817 Nuclear receptor 18 87

Links

Other Nuclear receptor family TFs
Other Cavia porcellus TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSSTOG00000003818 Ictidomys tridecemlineatus ENSSTOG00000003818 I 0.989
ENSAMEG00000015383 Ailuropoda melanoleuca ENSAMEG00000015383 I 0.987
NR1I3 Loxodonta africana ENSLAFG00000001180 I 0.983
NR1I3 Procavia capensis ENSPCAG00000013933 I 0.983
NR1I3 Otolemur garnettii ENSOGAG00000013738 I 0.983
NR1I3 Canis familiaris ENSCAFG00000012921 I 0.982
ENSDORG00000001701 Dipodomys ordii ENSDORG00000001701 I 0.982
NR1I3 Equus caballus ENSECAG00000020930 I 0.980
ENSMPUG00000014388 Mustela putorius furo ENSMPUG00000014388 I 0.979
Nr1i3 Mus musculus ENSMUSG00000005677 D 0.978
Nr1i3 Rattus norvegicus ENSRNOG00000003260 I 0.978
NR1I3 Felis catus ENSFCAG00000000497 I 0.976
NR1I3 Oryctolagus cuniculus ENSOCUG00000013537 I 0.976
NR1I3 Bos taurus ENSBTAG00000009215 I 0.976
ENSP00000356959-D1 Bos grunniens ENSP00000356959-D1 I 0.976
NR1I3 Sus scrofa ENSSSCG00000006353 I 0.976
NR1I3 Pteropus vampyrus ENSPVAG00000005540 I 0.974
NR1I3 Dasypus novemcinctus ENSDNOG00000045179 I 0.973
NR1I3 Ochotona princeps ENSOPRG00000003455 I 0.969
ENSMEUG00000001987 Macropus eugenii ENSMEUG00000001987 I 0.968
ENSSHAG00000016687 Sarcophilus harrisii ENSSHAG00000016687 I 0.966
NR1I3 Erinaceus europaeus ENSEEUG00000004981 I 0.966
NR1I3 Monodelphis domestica ENSMODG00000005089 I 0.966
NR1I3 Sorex araneus ENSSARG00000002684 I 0.964
ENSOARG00000009965 Ovis aries ENSOARG00000009965 I 0.957
NR1I3 Callithrix jacchus ENSCJAG00000004783 I 0.955
NR1I3 Homo sapiens ENSG00000143257 D 0.951
ENSNLEG00000014287 Nomascus leucogenys ENSNLEG00000014287 I 0.951
NR1I3 Pan troglodytes ENSPTRG00000001582 I 0.951
ENSCSAG00000002676 Chlorocebus sabaeus ENSCSAG00000002676 I 0.950
ENSP00000356959 Macaca fascicularis ENSP00000356959 I 0.950
NR1I3 Macaca mulatta ENSMMUG00000018128 I 0.950
ENSPANG00000014194 Papio anubis ENSPANG00000014194 I 0.950
NR1I3 Gorilla gorilla ENSGGOG00000005724 I 0.943
ENSTSYG00000003712 Tarsius syrichta ENSTSYG00000003712 I 0.937
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.918
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.913
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.911
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.910
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.882
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.881
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.881
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.877
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.870
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.870
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.870
NR1I2 Felis catus ENSFCAG00000006092 I 0.863
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.863
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.859
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.859
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.859
Aan_R009572 Calypte anna Aan_R009572 I 0.859
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.859
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.857
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.857
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.857
VDR Otolemur garnettii ENSOGAG00000005480 I 0.857
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.857
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.857
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.857
VDR Canis familiaris ENSCAFG00000009103 I 0.857
VDR Homo sapiens ENSG00000111424 D 0.857
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.857
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.857
VDR Sus scrofa ENSSSCG00000020864 I 0.857
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.857
VDR Tupaia belangeri ENSTBEG00000005717 I 0.857
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.857
VDR Tursiops truncatus ENSTTRG00000012578 I 0.857
VDR Felis catus ENSFCAG00000024594 I 0.857
VDR Bos taurus ENSBTAG00000016414 I 0.857
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.857
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.857
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.857
VDR Callithrix jacchus ENSCJAG00000015018 I 0.857
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.857
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.857
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.857
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.857
VDR Macaca mulatta ENSMMUG00000006727 I 0.857
VDR Microcebus murinus ENSMICG00000009017 I 0.857
VDR Myotis lucifugus ENSMLUG00000000912 I 0.857
VDR Loxodonta africana ENSLAFG00000006418 I 0.857
VDR Equus caballus ENSECAG00000015822 I 0.857
VDR Gorilla gorilla ENSGGOG00000016473 I 0.857
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.857
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.857
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.857
Vdr Mus musculus ENSMUSG00000022479 D 0.857
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.850
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.850
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.850
NR1I2 Bos taurus ENSBTAG00000019557 I 0.850
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.850
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.848
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.840
NR1I2 Loxodonta africana ENSLAFG00000007829 I 0.839
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.836
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.836
NR1I2 Homo sapiens ENSG00000144852 D 0.836
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.836
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.836
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.836
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.836
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.836
NR1I2 Equus caballus ENSECAG00000008728 I 0.836
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.836
nr1i2 Danio rerio ENSDARG00000029766 I 0.833
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.827
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.827
vdra Takifugu rubripes ENSTRUG00000011907 I 0.827
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.827
vdrb Danio rerio ENSDARG00000070721 I 0.827
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.827
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.827
vdralpha Oryzias latipes ENSORLG00000001063 I 0.827
vdr Oryzias latipes ENSORLG00000016402 I 0.827
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.827
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.827
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.827
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.827
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.827
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.827
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.825
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.825
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.825
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.824
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.821
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.821
NR1I2 Procavia capensis ENSPCAG00000009674 I 0.818
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.817
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.816
VDR Anolis carolinensis ENSACAG00000013485 I 0.816
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.803
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.803
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.800
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.800
NR1I3 Tursiops truncatus ENSTTRG00000009227 I 0.795
gw.291.27.1 Branchiostoma floridae gw.291.27.1 N 0.794
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.792
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.789
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.786
vdr Xenopus tropicalis XB-GENE-486505 I 0.784
vdr.S Xenopus laevis XB-GENE-864847 I 0.784
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.782
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.759
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.752
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.749