NR1I2 (Procavia capensis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSPCAG00000009674 T304394_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NR1I2
M03925_2.00 		Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY		 SELEX
Nitta et al.(2015)
NR1I2_1 		0.966 0.871
NR1I2
M05625_2.00 		Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX 		0.966 0.871
NR1I2
M09283_2.00 		Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C 		0.966 0.871
NR1I2
M05626_2.00 		Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX 		0.966 0.871
Nr1i2
M09316_2.00 		Mus musculus
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C 		0.921 0.857
ENSPMAG00000000180
M02403_2.00 		Petromyzon marinus
RGKWCRN
NYGWMCY		 PBM
Weirauch et al.(2014)
pTH5509 		0.909 0.657
VDR
M03363_2.00 		Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC		 SELEX
Jolma et al.(2013)
VDR_1 		0.877 0.614
Vdr
M03429_2.00 		Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY		 SELEX
Jolma et al.(2013)
Vdr_1 		0.877 0.614
VDR
M05877_2.00 		Homo sapiens
HRRGTTCA
TGAACYYD		 SMiLE-seq
Isakova et al.(2017)
VDR 		0.877 0.614
VDR
M09269_2.00 		Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A 		0.877 0.614
Vdr
M09315_2.00 		Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A 		0.877 0.614
VDR
M09606_2.00 		Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN		 Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484 		0.877 0.614
VDR
M11116_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q3 		0.877 0.614
VDR
M11117_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6_01 		0.877 0.614
VDR
M11118_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6 		0.877 0.614
ENSGALG00000028624
M02398_2.00 		Gallus gallus
GRGKTCAH
DTGAMCYC		 PBM
Weirauch et al.(2014)
pTH6492 		0.791 0.614
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000009009 Nuclear receptor 71 141

Links

Other Nuclear receptor family TFs
Other Procavia capensis TFs

138 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NR1I2 Loxodonta africana ENSLAFG00000007829 I 0.987
NR1I2 Homo sapiens ENSG00000144852 D 0.966
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.966
NR1I2 Felis catus ENSFCAG00000006092 I 0.966
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.966
NR1I2 Equus caballus ENSECAG00000008728 I 0.966
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.966
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.966
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.966
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.966
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.966
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.966
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.966
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.963
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.963
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.963
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.963
NR1I2 Bos taurus ENSBTAG00000019557 I 0.960
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.953
vdr-a Ciona intestinalis ENSCING00000020740 I 0.951
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.945
nr1i2 Danio rerio ENSDARG00000029766 I 0.944
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.944
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.936
Nr1i2 Rattus norvegicus ENSRNOG00000002906 I 0.921
ENSSTOG00000014988 Ictidomys tridecemlineatus ENSSTOG00000014988 I 0.921
Nr1i2 Mus musculus ENSMUSG00000022809 D 0.921
Nr1i2 Dipodomys ordii ENSDORG00000003966 I 0.921
NR1I2 Cavia porcellus ENSCPOG00000020161 I 0.921
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.919
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.918
NR1I2 Ochotona princeps ENSOPRG00000010448 I 0.917
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.917
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.917
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.911
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.909
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.909
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.909
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.909
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.909
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.909
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.909
vdr Oryzias latipes ENSORLG00000016402 I 0.909
vdralpha Oryzias latipes ENSORLG00000001063 I 0.909
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.909
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.909
VDR Anolis carolinensis ENSACAG00000013485 I 0.909
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.909
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.909
vdra Takifugu rubripes ENSTRUG00000011907 I 0.909
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.909
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.909
vdrb Danio rerio ENSDARG00000070721 I 0.909
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.909
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.909
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.909
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.906
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.903
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.901
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.901
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.898
vdr.S Xenopus laevis XB-GENE-864847 I 0.891
vdr Xenopus tropicalis XB-GENE-486505 I 0.887
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.886
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.879
Aan_R009572 Calypte anna Aan_R009572 I 0.879
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.879
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.879
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.879
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.878
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.877
VDR Tupaia belangeri ENSTBEG00000005717 I 0.877
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.877
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.877
VDR Tursiops truncatus ENSTTRG00000012578 I 0.877
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.877
VDR Sus scrofa ENSSSCG00000020864 I 0.877
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.877
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.877
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.877
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.877
VDR Canis familiaris ENSCAFG00000009103 I 0.877
VDR Homo sapiens ENSG00000111424 D 0.877
VDR Gorilla gorilla ENSGGOG00000016473 I 0.877
VDR Loxodonta africana ENSLAFG00000006418 I 0.877
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.877
VDR Bos taurus ENSBTAG00000016414 I 0.877
VDR Felis catus ENSFCAG00000024594 I 0.877
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.877
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.877
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.877
VDR Equus caballus ENSECAG00000015822 I 0.877
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.877
VDR Callithrix jacchus ENSCJAG00000015018 I 0.877
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.877
VDR Microcebus murinus ENSMICG00000009017 I 0.877
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.877
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.877
VDR Otolemur garnettii ENSOGAG00000005480 I 0.877
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.877
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.877
VDR Myotis lucifugus ENSMLUG00000000912 I 0.877
Vdr Mus musculus ENSMUSG00000022479 D 0.877
VDR Macaca mulatta ENSMMUG00000006727 I 0.877
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.877
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.877
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.869
SMU15000518 Schmidtea mediterranea SMU15000518 I 0.864
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.855
nr1i2 Tetraodon nigroviridis ENSTNIG00000013932 I 0.841
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.828
SNAPOd2T00001873001 Oikopleura dioica SNAPOd2T00001873001 I 0.827
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.827
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.827
csin113629 Clonorchis sinensis csin113629 I 0.824
NR1I3 Cavia porcellus ENSCPOG00000015331 I 0.818
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.816
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.816
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.804
tetur01g10970 Tetranychus urticae tetur01g10970 I 0.801
nhr-91 Caenorhabditis elegans WBGene00003681 I 0.800
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.800
CBN09702 Caenorhabditis brenneri CBN09702 I 0.800
CRE15343 Caenorhabditis remanei CRE15343 I 0.796
CBG07680 Caenorhabditis briggsae CBG07680 I 0.796
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.791
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.791
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.787
ENSAMEG00000015383 Ailuropoda melanoleuca ENSAMEG00000015383 I 0.780
nr1i2 Takifugu rubripes ENSTRUG00000003245 I 0.777
SNAPOd2T00013219001 Oikopleura dioica SNAPOd2T00013219001 I 0.773
SNAPOd2T00013215001 Oikopleura dioica SNAPOd2T00013215001 I 0.773
ENSSTOG00000003818 Ictidomys tridecemlineatus ENSSTOG00000003818 I 0.771
D918_02615 Trichuris suis D918_02615 I 0.765
D917_00700 Trichinella nativa D917_00700 I 0.765
EFV58098 Trichinella spiralis EFV58098 I 0.765
TMUE_s0008014200 Trichuris muris TMUE_s0008014200 I 0.765
Alligator_sinensis_CCG005392.1 Alligator sinensis Alligator_sinensis_CCG005392.1 I 0.752