Ca_08838 (Cicer arietinum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Ca_08838 T225433_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.761 0.807
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_08838 Homeodomain 492 548

Links

Other Homeodomain family TFs
Other Cicer arietinum TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29671.m000294 Ricinus communis 29671.m000294 I 0.681
PRH Arabidopsis thaliana AT4G29940 I 0.611
Bo1g014710 Brassica oleracea Bo1g014710 I 0.687
Bo3g175850 Brassica oleracea Bo3g175850 I 0.654
Bostr.7867s0841 Boechera stricta Bostr.7867s0841 I 0.664
Bra010310 Brassica rapa Bra010310 I 0.654
Bra011153 Brassica rapa Bra011153 I 0.695
Cagra.0268s0009 Capsella grandiflora Cagra.0268s0009 I 0.654
Carubv10004175m.g Capsella rubella Carubv10004175m.g I 0.654
cassava27173.m1 Manihot esculenta cassava27173.m1 I 0.649
chr4.CM0244.10.nd Lotus japonicus chr4.CM0244.10.nd I 0.645
Eucgr.C00114 Eucalyptus grandis Eucgr.C00114 I 0.690
gene17249-v1.0-hybrid Fragaria vesca gene17249-v1.0-hybrid I 0.705
GLYMA09G06730 Glycine max GLYMA09G06730 I 0.703
GLYMA13G00540 Glycine max GLYMA13G00540 I 0.749
GLYMA15G17956 Glycine max GLYMA15G17956 I 0.703
GLYMA17G06690 Glycine max GLYMA17G06690 I 0.753
Gorai.009G002500 Gossypium raimondii Gorai.009G002500 I 0.608
GSMUA_Achr8G23890_001 Musa acuminata GSMUA_Achr8G23890_001 N 0.626
MTR_2g038000 Medicago truncatula MTR_2g038000 D 0.761
PGSC0003DMG400028740 Solanum tuberosum PGSC0003DMG400028740 I 0.640
Pm008905 Prunus mume Pm008905 I 0.725
POPTR_0006s07520 Populus trichocarpa POPTR_0006s07520 N 0.638
POPTR_0018s13920 Populus trichocarpa POPTR_0018s13920 N 0.639
PRUPE_ppa023964mg Prunus persica PRUPE_ppa023964mg I 0.725
SapurV1A.0140s0170 Salix purpurea SapurV1A.0140s0170 N 0.637
PRHA Arabidopsis lyrata scaffold_701235.1 I 0.621
Solyc07g008730.1 Solanum lycopersicum Solyc07g008730.1 I 0.640
Thhalv10024489m.g Eutrema salsugineum Thhalv10024489m.g I 0.664