Cucsa.363170 (Cucumis sativus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cucsa.363170 T227231_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.867 0.947
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.867 0.947
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.867 0.947
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.839 0.860
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.839 0.860
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.806 0.789
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.790 0.772
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.790 0.772
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.786 0.789
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.786 0.789
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.786 0.789
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.786 0.789
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.786 0.754
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.786 0.754
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.769 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.363170.1 Homeodomain 135 191

Links

Other Homeodomain family TFs
Other Cucumis sativus TFs

617 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB010331 Anopheles albimanus AALB010331 I
Aan_R007097 Calypte anna Aan_R007097 I
ACHR005921 Anopheles christyi ACHR005921 I
ACUA000475 Anopheles culicifacies ACUA000475 I
ACYPI060841 Acyrthosiphon pisum ACYPI060841 I
ACYPI50903 Acyrthosiphon pisum ACYPI50903 I
ADIR000237 Anopheles dirus ADIR000237 I
AEPI003554 Anopheles epiroticus AEPI003554 I
Afo_R003215 Aptenodytes forsteri Afo_R003215 I
AFUN004907 Anopheles funestus AFUN004907 I
Alligator_sinensis_CCG000599.1 Alligator sinensis Alligator_sinensis_CCG000599.1 I
AMEC010301 Anopheles melas AMEC010301 I
ASIS008882 Anopheles sinensis ASIS008882 N
ASTEI11507 Anopheles stephensi ASTEI11507 I
CapteG93575 Capitella teleta CapteG93575 I
CGI_10023990 Crassostrea gigas CGI_10023990 I
Cmyd_10020950 Chelonia mydas Cmyd_10020950 I
CPIJ010141 Culex quinquefasciatus CPIJ010141 I
CpipJ_CPIJ010141 Culex pipiens CpipJ_CPIJ010141 I
D917_06660 Trichinella nativa D917_06660 I
EFV50386 Trichinella spiralis EFV50386 I
ENSACAG00000003052 Anolis carolinensis ENSACAG00000003052 I
EBF3 Anolis carolinensis ENSACAG00000008590 I
ENSAMEG00000000326 Ailuropoda melanoleuca ENSAMEG00000000326 I
ENSAMEG00000006442 Ailuropoda melanoleuca ENSAMEG00000006442 I
ENSAMEG00000011229 Ailuropoda melanoleuca ENSAMEG00000011229 I
ENSAMXG00000002783 Astyanax mexicanus ENSAMXG00000002783 I
ENSAMXG00000003402 Astyanax mexicanus ENSAMXG00000003402 I
ENSAMXG00000006585 Astyanax mexicanus ENSAMXG00000006585 I
ENSAMXG00000012646 Astyanax mexicanus ENSAMXG00000012646 I
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I
EBF4 Bos taurus ENSBTAG00000037757 I
EBF2 Bos taurus ENSBTAG00000040390 I
ENSBTAG00000047164 Bos taurus ENSBTAG00000047164 I
ENSBTAP00000042518-D1 Bos grunniens ENSBTAP00000042518-D1 I
ENSBTAP00000053340-D3 Bos grunniens ENSBTAP00000053340-D3 I
EBF4 Canis familiaris ENSCAFG00000006631 I
EBF2 Canis familiaris ENSCAFG00000008918 I
EBF1 Canis familiaris ENSCAFG00000017318 I
EBF1 Choloepus hoffmanni ENSCHOG00000012303 N
ENSCING00000003209 Ciona intestinalis ENSCING00000003209 I
EBF2 Callithrix jacchus ENSCJAG00000019921 I
EBF4 Callithrix jacchus ENSCJAG00000021027 I
EBF2 Cavia porcellus ENSCPOG00000001463 I
EBF4 Cavia porcellus ENSCPOG00000004862 I
EBF3 Cavia porcellus ENSCPOG00000005096 I
ENSCSAVG00000000458 Ciona savignyi ENSCSAVG00000000458 I
ebf1b Danio rerio ENSDARG00000069196 I
ebf3b Danio rerio ENSDARG00000091287 I
si:ch211-51e8.2 Danio rerio ENSDARG00000092635 I
ebf1a Danio rerio ENSDARG00000099849 I
ebf3a Danio rerio ENSDARG00000100244 I
ENSDNOG00000036735 Dasypus novemcinctus ENSDNOG00000036735 I
EBF2 Dasypus novemcinctus ENSDNOG00000040488 I
Ebf4 Dipodomys ordii ENSDORG00000004139 N
EBF1 Equus caballus ENSECAG00000007964 I
EBF4 Erinaceus europaeus ENSEEUG00000006485 N
EBF3 Echinops telfairi ENSETEG00000014060 I
ENSFALG00000001212 Ficedula albicollis ENSFALG00000001212 I
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I
EBF4 Homo sapiens ENSG00000088881 D
EBF3 Homo sapiens ENSG00000108001 D
EBF2 Homo sapiens ENSG00000221818 D
ebf2 Gasterosteus aculeatus ENSGACG00000008451 I
ebf3a Gasterosteus aculeatus ENSGACG00000009548 I
ENSGACG00000010053 Gasterosteus aculeatus ENSGACG00000010053 I
EBF1 Gasterosteus aculeatus ENSGACG00000020458 I
EBF2 Gallus gallus ENSGALG00000000242 I
EBF1 Gorilla gorilla ENSGGOG00000000033 I
EBF2 Gorilla gorilla ENSGGOG00000001585 I
EBF4 Gorilla gorilla ENSGGOG00000015503 I
ENSGMOG00000015541 Gadus morhua ENSGMOG00000015541 I
ENSGMOG00000016636 Gadus morhua ENSGMOG00000016636 I
ENSLACG00000001966 Latimeria chalumnae ENSLACG00000001966 I
ENSLACG00000017271 Latimeria chalumnae ENSLACG00000017271 I
EBF1 Loxodonta africana ENSLAFG00000017522 I
EBF2 Loxodonta africana ENSLAFG00000022465 I
ENSLOCG00000007615 Lepisosteus oculatus ENSLOCG00000007615 I
ENSLOCG00000009282 Lepisosteus oculatus ENSLOCG00000009282 I
ENSMEUG00000001579 Macropus eugenii ENSMEUG00000001579 N
ENSMEUG00000009275 Macropus eugenii ENSMEUG00000009275 I
EBF2 Meleagris gallopavo ENSMGAG00000000791 I
EBF1 Microcebus murinus ENSMICG00000010036 I
EBF2 Myotis lucifugus ENSMLUG00000011509 I
EBF4 Myotis lucifugus ENSMLUG00000023832 I
ENSMLUG00000025817 Myotis lucifugus ENSMLUG00000025817 I
EBF3 Macaca mulatta ENSMMUG00000011447 I
EBF4 Monodelphis domestica ENSMODG00000005256 I
ENSMODG00000016695 Monodelphis domestica ENSMODG00000016695 I
EBF2 Monodelphis domestica ENSMODG00000016702 I
ENSMPUG00000003195 Mustela putorius furo ENSMPUG00000003195 I
ENSMPUG00000009093 Mustela putorius furo ENSMPUG00000009093 I
ENSMPUG00000013409 Mustela putorius furo ENSMPUG00000013409 I
Ebf3 Mus musculus ENSMUSG00000010476 I
Ebf2 Mus musculus ENSMUSG00000022053 D
Ebf4 Mus musculus ENSMUSG00000053552 D
ENSNLEG00000001518 Nomascus leucogenys ENSNLEG00000001518 I
ENSNLEG00000004218 Nomascus leucogenys ENSNLEG00000004218 I
ENSNLEG00000016189 Nomascus leucogenys ENSNLEG00000016189 I
ENSOANG00000005673 Ornithorhynchus anatinus ENSOANG00000005673 I
EBF3 Ornithorhynchus anatinus ENSOANG00000012326 I
ENSOARG00000009825 Ovis aries ENSOARG00000009825 I
EBF1 Oryctolagus cuniculus ENSOCUG00000008985 I
EBF2 Oryctolagus cuniculus ENSOCUG00000011972 I
EBF4 Otolemur garnettii ENSOGAG00000004688 I
EBF3 Otolemur garnettii ENSOGAG00000007572 I
EBF2 Otolemur garnettii ENSOGAG00000010783 I
ENSONIG00000000451 Oreochromis niloticus ENSONIG00000000451 I
ENSONIG00000004376 Oreochromis niloticus ENSONIG00000004376 I
ENSONIG00000008631 Oreochromis niloticus ENSONIG00000008631 I
ENSONIG00000017655 Oreochromis niloticus ENSONIG00000017655 I
ENSONIG00000019141 Oreochromis niloticus ENSONIG00000019141 I
EBF1 Ochotona princeps ENSOPRG00000000119 N
EBF4 Ochotona princeps ENSOPRG00000013703 I
EBF1 Oryzias latipes ENSORLG00000002342 I
ebf3a Oryzias latipes ENSORLG00000005870 I
EBF1 Oryzias latipes ENSORLG00000007471 I
EBF4 Oryzias latipes ENSORLG00000020414 I
ENSP00000405003 Macaca fascicularis ENSP00000405003 I
ENSPANG00000020231 Papio anubis ENSPANG00000020231 I
EBF3 Procavia capensis ENSPCAG00000000348 N
ENSPFOG00000000294 Poecilia formosa ENSPFOG00000000294 I
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I
ENSPFOG00000017183 Poecilia formosa ENSPFOG00000017183 I
ENSPPYG00000002766 Pongo abelii ENSPPYG00000002766 I
ENSPPYG00000010836 Pongo abelii ENSPPYG00000010836 I
ENSPPYG00000018454 Pongo abelii ENSPPYG00000018454 I
ENSPSIG00000016691 Pelodiscus sinensis ENSPSIG00000016691 I
ENSPSIG00000016837 Pelodiscus sinensis ENSPSIG00000016837 I
EBF2 Pan troglodytes ENSPTRG00000003058 I
EBF4 Pteropus vampyrus ENSPVAG00000006830 I
EBF2 Pteropus vampyrus ENSPVAG00000024254 I
Ebf4 Rattus norvegicus ENSRNOG00000007408 I
Ebf2 Rattus norvegicus ENSRNOG00000011548 I
Ebf3 Rattus norvegicus ENSRNOG00000016102 I
ENSSHAG00000011963 Sarcophilus harrisii ENSSHAG00000011963 I
ENSSHAG00000017239 Sarcophilus harrisii ENSSHAG00000017239 I
EBF4 Sus scrofa ENSSSCG00000007171 I
EBF2 Sus scrofa ENSSSCG00000009655 I
ENSSSCG00000025415 Sus scrofa ENSSSCG00000025415 I
ENSSTOG00000006113 Ictidomys tridecemlineatus ENSSTOG00000006113 I
ENSSTOG00000026314 Ictidomys tridecemlineatus ENSSTOG00000026314 I
EBF2 Taeniopygia guttata ENSTGUG00000004267 I
EBF3 Taeniopygia guttata ENSTGUG00000011600 I
ENSTNIG00000017063 Tetraodon nigroviridis ENSTNIG00000017063 I
EBF1 Takifugu rubripes ENSTRUG00000009320 I
EBF4 Tursiops truncatus ENSTTRG00000003459 I
EBF1 Tursiops truncatus ENSTTRG00000009929 I
EBF3 Tursiops truncatus ENSTTRG00000014010 I
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I
ENSXMAG00000010668 Xiphophorus maculatus ENSXMAG00000010668 I
ENSXMAG00000012715 Xiphophorus maculatus ENSXMAG00000012715 I
kn Drosophila melanogaster FBgn0001319 D
GF11778 Drosophila ananassae FBgn0088818 I
GG22397 Drosophila erecta FBgn0114569 I
GH20479 Drosophila grimshawi FBgn0127942 I
GH25280 Drosophila grimshawi FBgn0132735 I
GI21022 Drosophila mojavensis FBgn0143754 I
GL10656 Drosophila persimilis FBgn0148266 I
GM20182 Drosophila sechellia FBgn0175065 I
GJ21945 Drosophila virilis FBgn0209060 I
GK23295 Drosophila willistoni FBgn0225257 I
GE12286 Drosophila yakuba FBgn0230042 I
GA24435 Drosophila pseudoobscura FBgn0245832 I
fgenesh2_pm.scaffold_381000001 Branchiostoma floridae fgenesh2_pm.scaffold_381000001 I
GB42304 Apis mellifera GB42304 I
HCOI01630600 Haemonchus contortus HCOI01630600 I
HelroG112029 Helobdella robusta HelroG112029 I
HelroG147258 Helobdella robusta HelroG147258 I
HPLM_0000807901 Haemonchus placei HPLM_0000807901 I
ISCW021819 Ixodes scapularis ISCW021819 I
KGM_09934 Danaus plexippus KGM_09934 I
L798_15574 Zootermopsis nevadensis L798_15574 I
LCUP013861 Lucilia cuprina LCUP013861 I
LotgiG225788 Lottia gigantea LotgiG225788 I
MCINX016127 Melitaea cinxia MCINX016127 I
MDOA011385 Musca domestica MDOA011385 I
MESCA011260 Megaselia scalaris MESCA011260 I
Myotis_brandtii_Ebf2_10005809 Myotis brandtii Myotis_brandtii_Ebf2_10005809 I
Myotis_brandtii_EBF4_10032372 Myotis brandtii Myotis_brandtii_EBF4_10032372 I
NECAME_10162 Necator americanus NECAME_10162 I
nRc.2.0.1.g06532 Romanomermis culicivorax nRc.2.0.1.g06532 I
Ocbimv22038947m.g Octopus bimaculoides Ocbimv22038947m.g N
Ogr09591 Ophisaurus gracilis Ogr09591 I
Ogr13832 Ophisaurus gracilis Ogr13832 I
PHUM119360 Pediculus humanus PHUM119360 I
Pvit_04283 Pogona vitticeps Pvit_04283 I
Pvit_16838 Pogona vitticeps Pvit_16838 I
Sakowv30011013m.g Saccoglossus kowalevskii Sakowv30011013m.g I
SPU_004702 Strongylocentrotus purpuratus SPU_004702 I
SVUK_0001114801 Strongylus vulgaris SVUK_0001114801 I
TC001270 Tribolium castaneum TC001270 I
TTRE_0000372001 Trichuris trichiura TTRE_0000372001 I
ebf4 Xenopus tropicalis XB-GENE-6030626 I
ebf2 Xenopus tropicalis XB-GENE-971136 I
ebf2.S Xenopus laevis XB-GENE-971141 I