CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

e_gw1.431.18.1 *(Physcomitrella patens)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	e_gw1.431.18.1	T227261_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.863	0.929
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.827	0.786
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.827	0.786
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.825	0.839
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.825	0.821
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.825	0.821
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.825	0.821
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.813	0.839
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.813	0.839
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.813	0.839
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.813	0.839
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.807	0.786
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.807	0.786
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.807	0.786
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.807	0.786
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.768	0.679
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.768	0.679
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.766	0.679
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.766	0.679
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.761	0.643
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.761	0.643
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.689	0.786
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.689	0.786
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.669	0.732
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.669	0.732
ATHB-51 M00867_2.00	Arabidopsis thaliana	ATWATKNN	NNMATWAT	PBM Franco-Zorrilla et al.(2014) ATHB51	0.602	0.643
ATHB-51 M06927_2.00	Arabidopsis thaliana	DNCAATAATTGAD	HTCAATTATTGNH	Dap-seq OMalley et al.(2016) LMI1_col_a	0.602	0.643
ATHB-51 M06928_2.00	Arabidopsis thaliana	NDNCAATAATTGA	TCAATTATTGNHN	Dap-seq OMalley et al.(2016) LMI1_colamp_a	0.602	0.643
ATHB-22 M02041_2.00	Arabidopsis thaliana	NNATAATWWWNNN	NNNWWWATTATNN	PBM Weirauch et al.(2014) pTH5883	0.599	0.607
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
e_gw1.431.18.1	Homeodomain	132	187	EKKRRLTFDQVRSLELNFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Physcomitrella patens* TFs

838 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
30136.m001048	Ricinus communis	30136.m001048	N	0.000
Aquca_022_00282	Aquilegia coerulea	Aquca_022_00282	I	0.000
Bo3g101690	Brassica oleracea	Bo3g101690	I	0.000
Bra024263	Brassica rapa	Bra024263	I	0.000
cassava2513.valid.m1	Manihot esculenta	cassava2513.valid.m1	I	0.000
cassava2514.valid.m1	Manihot esculenta	cassava2514.valid.m1	I	0.000
cassava2515.valid.m1	Manihot esculenta	cassava2515.valid.m1	I	0.000
cassava43226.valid.m1	Manihot esculenta	cassava43226.valid.m1	N	0.000
cassava43227.valid.m1	Manihot esculenta	cassava43227.valid.m1	N	0.000
Ca_04187	Cicer arietinum	Ca_04187	N	0.000
chr4.CM0680.260.nc	Lotus japonicus	chr4.CM0680.260.nc	N	0.000
Ciclev10001200m.g	Citrus clementina	Ciclev10001200m.g	N	0.000
gene27615-v1.0-hybrid	Fragaria vesca	gene27615-v1.0-hybrid	N	0.000
LjSGA_024981.1	Lotus japonicus	LjSGA_024981.1	N	0.000
MTR_3g096140	Medicago truncatula	MTR_3g096140	N	0.000
orange1.1g036240m.g	Citrus sinensis	orange1.1g036240m.g	N	0.000
POPTR_0007s03840	Populus trichocarpa	POPTR_0007s03840	N	0.000
SapurV1A.0550s0150	Salix purpurea	SapurV1A.0550s0150	N	0.000
Thhalv10004501m.g	Eutrema salsugineum	Thhalv10004501m.g	I	0.000

e_gw1.431.18.1 (Physcomitrella patens) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

838 Related TFs

e_gw1.431.18.1 **(Physcomitrella patens)
Homeodomain**