Ciclev10007435m.g (Citrus clementina)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Ciclev10007435m.g T228372_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.866 0.929
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.866 0.929
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.866 0.929
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.862 0.964
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.862 0.964
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10007435m Homeodomain 25 84

Links

Other Homeodomain family TFs
Other Citrus clementina TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10016551 Chelonia mydas Cmyd_10016551 I
CRE00505 Caenorhabditis remanei CRE00505 I
ENSACAG00000003701 Anolis carolinensis ENSACAG00000003701 I
ENSAMXG00000000658 Astyanax mexicanus ENSAMXG00000000658 I
ENSAMXG00000012318 Astyanax mexicanus ENSAMXG00000012318 I
zic6 Danio rerio ENSDARG00000071496 I
ENSDORG00000012706 Dipodomys ordii ENSDORG00000012706 I
ENSGMOG00000004419 Gadus morhua ENSGMOG00000004419 I
ENSMMUP00000019456 Macaca fascicularis ENSMMUP00000019456 I
ENSOANG00000012152 Ornithorhynchus anatinus ENSOANG00000012152 I
ZIC5 Oryctolagus cuniculus ENSOCUG00000026498 I
ENSONIG00000002719 Oreochromis niloticus ENSONIG00000002719 I
ZIC5 Ochotona princeps ENSOPRG00000007526 I
ENSPPYG00000005471 Pongo abelii ENSPPYG00000005471 I
ENSSHAG00000015025 Sarcophilus harrisii ENSSHAG00000015025 I
ZIC5 Sus scrofa ENSSSCG00000009521 I
ENSXMAG00000014868 Xiphophorus maculatus ENSXMAG00000014868 I
NEMVEDRAFT_v1g121215 Nematostella vectensis NEMVEDRAFT_v1g121215 I
NEMVEDRAFT_v1g25267 Nematostella vectensis NEMVEDRAFT_v1g25267 I
Ogr17257 Ophisaurus gracilis Ogr17257 I
RSKR_0001155900 Rhabditophanes kr3021 RSKR_0001155900 I
ref-2 Caenorhabditis elegans WBGene00004335 D