MDP0000233192 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000233192 T229033_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.732 0.629
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.728 0.600
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.728 0.600
HOS66
M02156_2.00 		Oryza sativa
NNNNDHNN
NNDHNNNN		 PBM
Weirauch et al.(2014)
pTH8332 		0.715 0.629
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.685 0.486
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.685 0.486
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.685 0.486
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.685 0.486
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.643 0.486
PK25034.1
M01254_2.00 		Cannabis sativa
NNTGACRKBN
NVMYGTCANN		 PBM
Lambert et al.(2019)
pTH11259 		0.608 0.771
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000233192 Homeodomain 282 316

Links

Other Homeodomain family TFs
Other Malus domestica TFs

1169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA006672 Oryza indica BGIOSGA006672 N 0.000
BGIOSGA018453 Oryza indica BGIOSGA018453 N 0.000
BGIOSGA036334 Oryza indica BGIOSGA036334 N 0.000
OBART12G09450 Oryza barthii OBART12G09450 N 0.000
OBART12G09480 Oryza barthii OBART12G09480 N 0.000
OGLUM06G17270 Oryza glumaepatula OGLUM06G17270 N 0.000
OGLUM06G17310 Oryza glumaepatula OGLUM06G17310 N 0.000
OGLUM12G10670 Oryza glumaepatula OGLUM12G10670 N 0.000
OGLUM12G10680 Oryza glumaepatula OGLUM12G10680 N 0.000
OLONG_012662 Oryza longistaminata OLONG_012662 N 0.000
OLONG_012664 Oryza longistaminata OLONG_012664 N 0.000
OLONG_018852 Oryza longistaminata OLONG_018852 N 0.000
OMERI06G17150 Oryza meridionalis OMERI06G17150 N 0.000
OMERI06G17180 Oryza meridionalis OMERI06G17180 N 0.000
ONIVA06G15740 Oryza nivara ONIVA06G15740 N 0.000
ONIVA12G01580 Oryza nivara ONIVA12G01580 N 0.000
ONIVA12G01620 Oryza nivara ONIVA12G01620 N 0.000
OPUNC06G14680 Oryza punctata OPUNC06G14680 N 0.000
OPUNC06G14730 Oryza punctata OPUNC06G14730 N 0.000
OPUNC12G08600 Oryza punctata OPUNC12G08600 N 0.000
ORGLA06G0135200 Oryza glaberrima ORGLA06G0135200 N 0.000
ORGLA12G0089600 Oryza glaberrima ORGLA12G0089600 N 0.000
ORGLA12G0089800 Oryza glaberrima ORGLA12G0089800 N 0.000
ORUFI06G17170 Oryza rufipogon ORUFI06G17170 N 0.000
ORUFI12G10490 Oryza rufipogon ORUFI12G10490 N 0.000
ORUFI12G10530 Oryza rufipogon ORUFI12G10530 N 0.000
OS06G0504100 Oryza sativa OS06G0504100 N 0.000
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.000