SMU15032098 (Schmidtea mediterranea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SMU15032098 T230296_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.833 0.947
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.833 0.947
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.833 0.947
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.825 0.912
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.825 0.912
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.825 0.912
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.812 0.895
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.812 0.895
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.812 0.895
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.812 0.895
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.812 0.895
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.812 0.895
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.802 0.930
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.790 0.947
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMU15032098 Homeodomain 171 230

Links

Other Homeodomain family TFs
Other Schmidtea mediterranea TFs

389 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HR83 Aedes aegypti AAEL007350 I
AALB009657 Anopheles albimanus AALB009657 I
AARA006703 Anopheles arabiensis AARA006703 I
AATE004130 Anopheles atroparvus AATE004130 I
ACAC_0001082701 Angiostrongylus cantonensis ACAC_0001082701 I
ACOC_0001282001 Angiostrongylus costaricensis ACOC_0001282001 I
ACYPI48102 Acyrthosiphon pisum ACYPI48102 I
AEPI004731 Anopheles epiroticus AEPI004731 I
AFUN005541 Anopheles funestus AFUN005541 I
AGAP002234 Anopheles gambiae AGAP002234 I
AMAM005986 Anopheles maculatus AMAM005986 I
AMEC011506 Anopheles melas AMEC011506 I
AMEM012481 Anopheles merus AMEM012481 I
AMIN000835 Anopheles minimus AMIN000835 I
AQUA004261 Anopheles quadriannulatus AQUA004261 I
ASTEI03427 Anopheles stephensi ASTEI03427 I
BGLB014038 Biomphalaria glabrata BGLB014038 N
BXY_1663900 Bursaphelenchus xylophilus BXY_1663900 N
CapteG177303 Capitella teleta CapteG177303 I
CBG09846 Caenorhabditis briggsae CBG09846 I
CBN10661 Caenorhabditis brenneri CBN10661 I
CPIJ015933 Culex quinquefasciatus CPIJ015933 I
CpipJ_CPIJ015933 Culex pipiens CpipJ_CPIJ015933 I
CRE25188 Caenorhabditis remanei CRE25188 I
Hr83 Drosophila melanogaster FBgn0037436 D
GA10225 Drosophila pseudoobscura FBgn0070284 I
GF16659 Drosophila ananassae FBgn0093680 I
GG13368 Drosophila erecta FBgn0105640 I
GH18089 Drosophila grimshawi FBgn0125557 I
GI24589 Drosophila mojavensis FBgn0147311 I
GL22067 Drosophila persimilis FBgn0159659 I
GM10889 Drosophila sechellia FBgn0165835 I
GD19868 Drosophila simulans FBgn0191357 I
GJ22654 Drosophila virilis FBgn0209758 I
GK13826 Drosophila willistoni FBgn0215834 I
GE10213 Drosophila yakuba FBgn0228087 I
HelroG148423 Helobdella robusta HelroG148423 I
HPLM_0002159101 Haemonchus placei HPLM_0002159101 I
Hsal_03084--XP_001121181.1_APIME Harpegnathos saltator Hsal_03084--XP_001121181.1_APIME I
ISCW008659 Ixodes scapularis ISCW008659 I
L596_g19535 Steinernema carpocapsae L596_g19535 N
L798_08383 Zootermopsis nevadensis L798_08383 I
L889_g32531 Steinernema feltiae L889_g32531 I
L892_g29081 Steinernema scapterisci L892_g29081 N
LCUP007875 Lucilia cuprina LCUP007875 I
LLOJ000718 Lutzomyia longipalpis LLOJ000718 I
LLOJ001302 Lutzomyia longipalpis LLOJ001302 I
LotgiG132791 Lottia gigantea LotgiG132791 I
MDOA009347 Musca domestica MDOA009347 I
NV10871 Nasonia vitripennis NV10871 I
Ocbimv22005486m.g Octopus bimaculoides Ocbimv22005486m.g I
PPAI010314 Phlebotomus papatasi PPAI010314 I
PTRK_0000986400 Parastrongyloides trichosuri PTRK_0000986400 N
RSKR_0000433000 Rhabditophanes kr3021 RSKR_0000433000 I
Sakowv30002570m.g Saccoglossus kowalevskii Sakowv30002570m.g I
SMAR006023 Strigamia maritima SMAR006023 I
SMUV_0000977701 Syphacia muris SMUV_0000977701 N
SPAL_0001030000 Strongyloides papillosus SPAL_0001030000 N
SSTP_0000371600 Strongyloides stercoralis SSTP_0000371600 N
SVE_0494600 Strongyloides venezuelensis SVE_0494600 N
TC010460 Tribolium castaneum TC010460 I
tetur01g07700 Tetranychus urticae tetur01g07700 I
nhr-239 Caenorhabditis elegans WBGene00021848 I