D915_02388 (Fasciola hepatica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 D915_02388 T233415_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.690 0.648
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.690 0.648
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.690 0.648
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.690 0.648
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.690 0.648
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.690 0.611
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.690 0.611
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.690 0.611
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.690 0.611
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.690 0.611
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.690 0.611
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.690 0.611
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.690 0.611
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.690 0.611
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.681 0.630
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.681 0.630
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.681 0.630
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.681 0.630
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.681 0.630
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.681 0.630
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.681 0.630
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.681 0.630
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.681 0.630
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.681 0.630
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.681 0.630
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.681 0.630
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.681 0.630
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.681 0.630
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.681 0.630
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.681 0.630
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.681 0.630
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.681 0.630
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.681 0.630
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.681 0.630
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.681 0.630
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.681 0.630
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.681 0.630
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.681 0.630
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.681 0.630
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.681 0.630
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.626 0.519
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D915_02388 Homeodomain 124 177

Links

Other Homeodomain family TFs
Other Fasciola hepatica TFs

532 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GBF4 Arabidopsis thaliana AT1G03970 N
Bo5g004230 Brassica oleracea Bo5g004230 N
Bo7g067030 Brassica oleracea Bo7g067030 N
Bostr.26675s0358 Boechera stricta Bostr.26675s0358 N
Bra015281 Brassica rapa Bra015281 N
Cagra.1671s0014 Capsella grandiflora Cagra.1671s0014 N
Carubv10011573m.g Capsella rubella Carubv10011573m.g N
Ciclev10002029m.g Citrus clementina Ciclev10002029m.g I
fgenesh2_kg.1__328__AT1G03970.1 Arabidopsis lyrata fgenesh2_kg.1__328__AT1G03970.1 N
gene11837-v1.0-hybrid Fragaria vesca gene11837-v1.0-hybrid N
GLYMA05G25200 Glycine max GLYMA05G25200 I
GLYMA08G08220 Glycine max GLYMA08G08220 N
GLYMA10G36820 Glycine max GLYMA10G36820 N
Gorai.002G207000 Gossypium raimondii Gorai.002G207000 I
Gorai.005G259700 Gossypium raimondii Gorai.005G259700 I
GRMZM2G132868 Zea mays GRMZM2G132868 I
GRMZM5G858197 Zea mays GRMZM5G858197 I
GSMUA_Achr2G20490_001 Musa acuminata GSMUA_Achr2G20490_001 I
GSMUA_Achr3G22470_001 Musa acuminata GSMUA_Achr3G22470_001 I
GSMUA_Achr8G07740_001 Musa acuminata GSMUA_Achr8G07740_001 I
GSMUA_Achr9G08900_001 Musa acuminata GSMUA_Achr9G08900_001 N
LOC_Os05g36160 Oryza sativa LOC_Os05g36160 D
LPERR05G14180 Leersia perrieri LPERR05G14180 I
Lus10028575.g Linum usitatissimum Lus10028575.g N
MDP0000208334 Malus domestica MDP0000208334 N
MDP0000706379 Malus domestica MDP0000706379 I
mgf009464m Mimulus guttatus mgf009464m N
MLOC_64571 Hordeum vulgare MLOC_64571 I
MTR_1g098590 Medicago truncatula MTR_1g098590 N
OB05G25740 Oryza brachyantha OB05G25740 I
OBART05G17920 Oryza barthii OBART05G17920 I
OGLUM05G18920 Oryza glumaepatula OGLUM05G18920 I
OMERI05G15500 Oryza meridionalis OMERI05G15500 I
ONIVA05G18780 Oryza nivara ONIVA05G18780 I
ORGLA05G0154900 Oryza glaberrima ORGLA05G0154900 I
ORUFI05G19090 Oryza rufipogon ORUFI05G19090 I
OS05G0437700 Oryza sativa OS05G0437700 I
Pavir.Ea03718 Panicum virgatum Pavir.Ea03718 I
Pavir.J05659 Panicum virgatum Pavir.J05659 I
Pavir.J06257 Panicum virgatum Pavir.J06257 I
Pavir.J36143 Panicum virgatum Pavir.J36143 I
PGSC0003DMG400029774 Solanum tuberosum PGSC0003DMG400029774 I
POPTR_0002s06800 Populus trichocarpa POPTR_0002s06800 I
POPTR_0005s21500 Populus trichocarpa POPTR_0005s21500 I
SapurV1A.0134s0060 Salix purpurea SapurV1A.0134s0060 I
SapurV1A.0625s0150 Salix purpurea SapurV1A.0625s0150 I
Sb03g040970 Sorghum bicolor Sb03g040970 I
Sb09g021580 Sorghum bicolor Sb09g021580 I
Si003247m.g Setaria italica Si003247m.g I
Solyc01g104650.2 Solanum lycopersicum Solyc01g104650.2 I
TCM_006432 Theobroma cacao TCM_006432 I
Thhalv10009710m.g Eutrema salsugineum Thhalv10009710m.g N
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I
TRIUR3_19588 Triticum urartu TRIUR3_19588 I