CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Contig10067.0.g63 *(Oxytricha trifallax)* HSF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00447 (HSF_DNA-bind)	IPR000232	Contig10067.0.g63	T243437_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HSFA4A M06947_2.00	Arabidopsis thaliana	NNNRGAABBTTCTAGAANN	NNTTCTAGAAVVTTCYNNN	Dap-seq OMalley et al.(2016) HSF21_col_a	0.392	0.562
HSFB4 M06936_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFB4_col_a	0.366	0.528
HSFA6B M06941_2.00	Arabidopsis thaliana	RGAASNTTCTAGA	TCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA6B_colamp_a	0.346	0.528
HSFA6B M06942_2.00	Arabidopsis thaliana	RGAABNTTCTRGAAN	NTTCYAGAANVTTCY	Dap-seq OMalley et al.(2016) HSFA6B_col	0.346	0.528
HSFA1E M06939_2.00	Arabidopsis thaliana	RGAANNTTCTAGA	TCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSFA1E_col_a	0.340	0.506
HSFA1E M06940_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA1E_colamp_a	0.340	0.506
HSFC1 M00868_2.00	Arabidopsis thaliana	NDTCBNNN	NNNVGAHN	PBM Franco-Zorrilla et al.(2014) HSFC1	0.338	0.494
HSFC1 M06943_2.00	Arabidopsis thaliana	GAASNTTCTAG	CTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFC1_col_a	0.338	0.494
HSFC1 M06944_2.00	Arabidopsis thaliana	RGAASNTTCTAGAANVW	WBNTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFC1_colamp_a	0.338	0.494
HSFB2A M00869_2.00	Arabidopsis thaliana	NNNNNTTCB	VGAANNNNN	PBM Franco-Zorrilla et al.(2014) HSFB2A	0.335	0.483
HSFB2A M06952_2.00	Arabidopsis thaliana	GAANNTTCYAGA	TCTRGAANNTTC	Dap-seq OMalley et al.(2016) HSF6_col_a	0.335	0.483
HSFA1B M06948_2.00	Arabidopsis thaliana	GAANNTTCTAGA	TCTAGAANNTTC	Dap-seq OMalley et al.(2016) HSF3_col_a	0.334	0.517
HSFA1B M06949_2.00	Arabidopsis thaliana	TTCYRG	CYRGAA	Dap-seq OMalley et al.(2016) HSF3_colamp_a	0.334	0.517
HSF1 M03329_2.00	Homo sapiens	GAANVTTCBVGAA	TTCBVGAABNTTC	SELEX Jolma et al.(2013) HSF1_1	0.334	0.506
HSF1 M03330_2.00	Homo sapiens	GAANRTTCBAGAA	TTCTVGAAYNTTC	SELEX Jolma et al.(2013) HSF1_2	0.334	0.506
HSF1 M05523_2.00	Homo sapiens	VGAABVTTCBVGAWN	NWTCBVGAABVTTCB	SELEX Yin et al.(2017) HSF1_eDBD_HT-SELEX	0.334	0.506
HSF1 M05525_2.00	Homo sapiens	VGAANRTTCKVGAAN	NTTCBMGAAYNTTCB	SELEX Yin et al.(2017) HSF1_FL_HT-SELEX	0.334	0.506
HSF1 M07977_2.00	Homo sapiens	GDCSYGGGTTCRADYCCC	GGGRHTYGAACCCRSGHC	ChIP-seq Gerstein et al.(2012) HepG2_HSF1_Stanford	0.334	0.506
HSF1 M09230_2.00	Homo sapiens	NRGAANNTTCYRGAA	TTCYRGAANNTTCYN	Misc Kulakovskiy et al.(2013) HSF1_HUMAN.H11MO.0.A	0.334	0.506
Hsf1 M09232_2.00	Mus musculus	NRGAANNTTCYRGAA	TTCYRGAANNTTCYN	Misc Kulakovskiy et al.(2013) HSF1_MOUSE.H11MO.0.A	0.334	0.506
HSF1 M09592_2.00	Homo sapiens	NNBBCYRGAANNTTCYRGVV	BBCYRGAANNTTCYRGVVNN	Misc Heinz et al.(2010) HepG2-HSF1_GSE31477	0.334	0.506
Hsf1 M09593_2.00	Mus musculus	NRGAANNTTCYRGAA	TTCYRGAANNTTCYN	Misc Heinz et al.(2010) Striatum-HSF1_GSE38000	0.334	0.506
HSF1 M10863_2.00	Homo sapiens	NGAAHNTTCY	RGAANDTTCN	Transfac Matys et al.(2006) V$HSF1_01	0.334	0.506
HSF1 M10864_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HSF1_Q5_01	0.334	0.506
HSF1 M10865_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HSF1_Q5	0.334	0.506
HSF1 M10866_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HSF1_Q6_01	0.334	0.506
HSF1 M10867_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HSF1_Q6	0.334	0.506
HSF1 M10868_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HSF_Q6	0.334	0.506
HSF1 M05524_2.00	Homo sapiens	RGAANRTTCYRGAWN	NWTCYRGAAYNTTCY	SELEX Yin et al.(2017) HSF1_eDBD_Methyl-HT-SELEX	0.334	0.506
HSF1 M05526_2.00	Homo sapiens	RGAANVTTCYRGAWN	NWTCYRGAABNTTCY	SELEX Yin et al.(2017) HSF1_FL_Methyl-HT-SELEX	0.334	0.506
Hsf M03908_2.00	Drosophila melanogaster	BVGAANRTTCTVGAANN	NNTTCBAGAAYNTTCBV	SELEX Nitta et al.(2015) Hsf_1	0.324	0.506
Hsf M03909_2.00	Drosophila melanogaster	NVGAAYNTTCBAGAANN	NNTTCTVGAANRTTCBN	SELEX Nitta et al.(2015) Hsf_2	0.324	0.506
Hsf M03910_2.00	Drosophila melanogaster	NVGAAYNTTCTVGAANN	NNTTCBAGAANRTTCBN	SELEX Nitta et al.(2015) Hsf_3	0.324	0.506
Hsf M03911_2.00	Drosophila melanogaster	NVGAANRTTCBAGAANN	NNTTCTVGAAYNTTCBN	SELEX Nitta et al.(2015) Hsf_4	0.324	0.506
Hsf M06388_2.00	Drosophila melanogaster	KMGAADNTTCKMGA	TCKMGAANHTTCKM	B1H Zhu et al.(2011) Hsf_FlyReg_FBgn0001222	0.324	0.506
Hsf M10869_2.00	Drosophila melanogaster	HTTCK	MGAAD	Transfac Matys et al.(2006) I$HSF_01	0.324	0.506
Hsf M10870_2.00	Drosophila melanogaster	MGAADMGAADMGAAD	HTTCKHTTCKHTTCK	Transfac Matys et al.(2006) I$HSF_02	0.324	0.506
Hsf M10871_2.00	Drosophila melanogaster	MGAADHTTCKHTTCK	MGAADMGAADHTTCK	Transfac Matys et al.(2006) I$HSF_03	0.324	0.506
Hsf M10872_2.00	Drosophila melanogaster	MGAADHTTCKMGAAD	HTTCKMGAADHTTCK	Transfac Matys et al.(2006) I$HSF_04	0.324	0.506
Hsf M10873_2.00	Drosophila melanogaster	HTTCKHTTCKMGAAD	HTTCKMGAADMGAAD	Transfac Matys et al.(2006) I$HSF_05	0.324	0.506
hsf-1 M02249_2.00	Neurospora crassa	NNNTTCBDNN	NNHVGAANNN	PBM Weirauch et al.(2014) pTH8857	0.323	0.404
HSFA6A M06950_2.00	Arabidopsis thaliana	GAASNTTCTAGAANNW	WNNTTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_col_a	0.321	0.517
HSFA6A M06951_2.00	Arabidopsis thaliana	GAASNTTCTAGAA	TTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_colamp_a	0.321	0.517
HSF4 M03325_2.00	Homo sapiens	GAANNTTCBVGAA	TTCBVGAANNTTC	SELEX Jolma et al.(2013) HSF4_1	0.321	0.461
HSF4 M05509_2.00	Homo sapiens	VGAABVTTCKVGAAN	NTTCBMGAABVTTCB	SELEX Yin et al.(2017) HSF4_eDBD_HT-SELEX	0.321	0.461
HSF4 M10862_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HSF4_Q3	0.321	0.461
HSF4 M05510_2.00	Homo sapiens	RGAABVWDCYRGAWN	NWTCYRGHWBVTTCY	SELEX Yin et al.(2017) HSF4_eDBD_Methyl-HT-SELEX	0.321	0.461
HSFB2B M06945_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_col_a	0.320	0.472
HSFB2B M06946_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_colamp_a	0.320	0.472
For this family, TFs with SR scores > 0.318* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Contig10067.0.g63	HSF	255	347	FLLKTYEIVDDKKYDSIVAWSPDGESFVVKKQNEFSETILPRFFKHNNFSSFIRQLNMYDFHKTKRSNNEHCFKHPFFLRGKKHLLQEIKRKS

Links
Other HSF family TFs
Other *Oxytricha trifallax* TFs

1383 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aquca_005_00610	Aquilegia coerulea	Aquca_005_00610	N
Bostr.18473s0167	Boechera stricta	Bostr.18473s0167	I
BRADI4G34870	Brachypodium distachyon	BRADI4G34870	N
gene00752-v1.0-hybrid	Fragaria vesca	gene00752-v1.0-hybrid	N
Gorai.002G116400	Gossypium raimondii	Gorai.002G116400	N
Gorai.004G212900	Gossypium raimondii	Gorai.004G212900	N
Gorai.010G090500	Gossypium raimondii	Gorai.010G090500	N
MLOC_57269	Hordeum vulgare	MLOC_57269	I
OB08G25860	Oryza brachyantha	OB08G25860	N
OBART11G12110	Oryza barthii	OBART11G12110	N
OGLUM06G11560	Oryza glumaepatula	OGLUM06G11560	N
OGLUM11G11800	Oryza glumaepatula	OGLUM11G11800	I
ONIVA06G12430	Oryza nivara	ONIVA06G12430	N
ONIVA11G11880	Oryza nivara	ONIVA11G11880	I
ORUFI06G11220	Oryza rufipogon	ORUFI06G11220	N
PDK_20s1360531g001	Phoenix dactylifera	PDK_20s1360531g001	N
PDK_20s1360831g001	Phoenix dactylifera	PDK_20s1360831g001	N
PDK_20s1499141g001	Phoenix dactylifera	PDK_20s1499141g001	N
PGSC0003DMG401024463	Solanum tuberosum	PGSC0003DMG401024463	I
TRIUR3_17846	Triticum urartu	TRIUR3_17846	N

Contig10067.0.g63 (Oxytricha trifallax) HSF

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1383 Related TFs

Contig10067.0.g63 **(Oxytricha trifallax)
HSF**