PK05866.1 (Cannabis sativa)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 PK05866.1 T243458_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFA1E
M06939_2.00 		Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_col_a 		0.522 0.862
HSFA1E
M06940_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a 		0.522 0.862
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.497 0.747
HSFA1B
M06948_2.00 		Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF3_col_a 		0.497 0.851
HSFA1B
M06949_2.00 		Arabidopsis thaliana
TTCYRG
CYRGAA		 Dap-seq
OMalley et al.(2016)
HSF3_colamp_a 		0.497 0.851
HSFA6B
M06941_2.00 		Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a 		0.487 0.759
HSFA6B
M06942_2.00 		Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_col 		0.487 0.759
HSFB4
M06936_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFB4_col_a 		0.472 0.747
HSFA6A
M06950_2.00 		Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_col_a 		0.437 0.678
HSFA6A
M06951_2.00 		Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a 		0.437 0.678
HSFB2A
M00869_2.00 		Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN		 PBM
Franco-Zorrilla et al.(2014)
HSFB2A 		0.427 0.655
HSFB2A
M06952_2.00 		Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF6_col_a 		0.427 0.655
HSFB2B
M06945_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_col_a 		0.422 0.701
HSFB2B
M06946_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_colamp_a 		0.422 0.701
HSFC1
M00868_2.00 		Arabidopsis thaliana
NDTCBNNN
NNNVGAHN		 PBM
Franco-Zorrilla et al.(2014)
HSFC1 		0.415 0.701
HSFC1
M06943_2.00 		Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFC1_col_a 		0.415 0.701
HSFC1
M06944_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a 		0.415 0.701
HSFB3
M06937_2.00 		Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY		 Dap-seq
OMalley et al.(2016)
HSFB3_col_a 		0.399 0.644
HSFB3
M06938_2.00 		Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT		 Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a 		0.399 0.644
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK05866.1 HSF 56 146

Links

Other HSF family TFs
Other Cannabis sativa TFs

1491 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29650.m000275 Ricinus communis 29650.m000275 N
NAC1 Arabidopsis lyrata Al_scaffold_0001_4992 N
NAC021 Arabidopsis thaliana AT1G56010 N
BGIOSGA007201 Oryza indica BGIOSGA007201 N
Bo3g065240 Brassica oleracea Bo3g065240 N
Bo3g185760 Brassica oleracea Bo3g185760 N
Bo5g132990 Brassica oleracea Bo5g132990 N
Bostr.3640s0073 Boechera stricta Bostr.3640s0073 N
Bra001480 Brassica rapa Bra001480 N
Bra030820 Brassica rapa Bra030820 N
Bra034713 Brassica rapa Bra034713 N
Ca_13537 Cicer arietinum Ca_13537 N
chr3.CM0279.430.nd Lotus japonicus chr3.CM0279.430.nd N
Ciclev10021117m.g Citrus clementina Ciclev10021117m.g N
Cla023574 Citrullus lanatus Cla023574 N
Eucgr.F01449 Eucalyptus grandis Eucgr.F01449 N
F775_30297 Aegilops tauschii F775_30297 I
GLYMA08G18470 Glycine max GLYMA08G18470 N
GRMZM2G167018 Zea mays GRMZM2G167018 I
MTR_2g064470 Medicago truncatula MTR_2g064470 N
OPUNC03G00610 Oryza punctata OPUNC03G00610 N
PGSC0003DMG400022134 Solanum tuberosum PGSC0003DMG400022134 N
SapurV1A.0085s0410 Salix purpurea SapurV1A.0085s0410 N
Sb07g005610 Sorghum bicolor Sb07g005610 I
Sb10g027100 Sorghum bicolor Sb10g027100 N
scaffold_301478.1 Arabidopsis lyrata scaffold_301478.1 N
TCM_032479 Theobroma cacao TCM_032479 N
Thhalv10011659m.g Eutrema salsugineum Thhalv10011659m.g N
Thhalv10021297m.g Eutrema salsugineum Thhalv10021297m.g N
Traes_7DL_BDD45DB24 Triticum aestivum Traes_7DL_BDD45DB24 I
TRIUR3_29250 Triticum urartu TRIUR3_29250 I