txndc15 (Gasterosteus aculeatus)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSGACG00000020876 T244097_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF2
M05545_2.00 		Homo sapiens
NGAAAVYGAAAS
STTTCRBTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_HT-SELEX 		0.721 0.721
IRF2
M02691_2.00 		Homo sapiens
SGAAAGYGAAASYNWWHH
DDWWNRSTTTCRCTTTCS		 SELEX
Mathelier et al.(2014)
MA0051.1 		0.721 0.721
IRF2
M09237_2.00 		Homo sapiens
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_HUMAN.H11MO.0.A 		0.721 0.721
IRF2
M09596_2.00 		Homo sapiens
NRAAVNRRAASB
VSTTYYNBTTYN		 Misc
Heinz et al.(2010)
Erythroblas-IRF2_GSE36985 		0.721 0.721
IRF2
M10892_2.00 		Homo sapiens
GAAAAGYGAAASY
RSTTTCRCTTTTC		 Transfac
Matys et al.(2006)
V$IRF2_01 		0.721 0.721
IRF2
M10893_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF2_Q6 		0.721 0.721
IRF2
M05546_2.00 		Homo sapiens
NGAAASYGAAAS
STTTCRSTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_Methyl-HT-SELEX 		0.721 0.721
Irf2
M00805_2.00 		Mus musculus
NDWNHGAAAV
BTTTCDNWHN		 PBM
Weirauch et al.(2013)
pTH2835 		0.712 0.712
Irf2
M09245_2.00 		Mus musculus
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_MOUSE.H11MO.0.B 		0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000027603 IRF 7 111
ENSGACP00000027604 IRF 7 111

Links

Other IRF family TFs
Other Gasterosteus aculeatus TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00025p00060270 Amborella trichopoda AMTR_s00025p00060270 N
Aquca_026_00063 Aquilegia coerulea Aquca_026_00063 N
MTERF4 Arabidopsis thaliana AT4G02990 N
Bo9g006180 Brassica oleracea Bo9g006180 N
Bostr.2983s0143 Boechera stricta Bostr.2983s0143 N
Bra036228 Brassica rapa Bra036228 N
Cagra.2552s0028 Capsella grandiflora Cagra.2552s0028 N
Carubv10003638m.g Capsella rubella Carubv10003638m.g N
cassava29542.valid.m1 Manihot esculenta cassava29542.valid.m1 N
Ca_25867 Cicer arietinum Ca_25867 N
Ciclev10019732m.g Citrus clementina Ciclev10019732m.g N
Cla005647 Citrullus lanatus Cla005647 N
Cucsa.033690 Cucumis sativus Cucsa.033690 N
Eucgr.A01358 Eucalyptus grandis Eucgr.A01358 N
fgenesh2_kg.6__3397__AT4G02990.1 Arabidopsis lyrata fgenesh2_kg.6__3397__AT4G02990.1 N
gene27730-v1.0-hybrid Fragaria vesca gene27730-v1.0-hybrid N
GLYMA02G38800 Glycine max GLYMA02G38800 N
Gorai.004G084100 Gossypium raimondii Gorai.004G084100 N
Lus10014877.g Linum usitatissimum Lus10014877.g N
mgf007983m Mimulus guttatus mgf007983m N
mgf009605m Mimulus guttatus mgf009605m N
MTR_5g068860 Medicago truncatula MTR_5g068860 N
orange1.1g010066m.g Citrus sinensis orange1.1g010066m.g N
PGSC0003DMG400002856 Solanum tuberosum PGSC0003DMG400002856 N
PK15839.1 Cannabis sativa PK15839.1 N
Pm019894 Prunus mume Pm019894 N
POPTR_0014s13360 Populus trichocarpa POPTR_0014s13360 N
PRUPE_ppa004198mg Prunus persica PRUPE_ppa004198mg N
SapurV1A.0053s0470 Salix purpurea SapurV1A.0053s0470 N
Solyc04g005630.2 Solanum lycopersicum Solyc04g005630.2 N
TCM_004475 Theobroma cacao TCM_004475 N
Thhalv10028570m.g Eutrema salsugineum Thhalv10028570m.g N
VIT_07s0104g00720 Vitis vinifera VIT_07s0104g00720 N