Brh_R001640 (Buceros rhinoceros)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Brh_R001640 T244518_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF2
M05545_2.00 		Homo sapiens
NGAAAVYGAAAS
STTTCRBTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_HT-SELEX 		0.971 0.971
IRF2
M02691_2.00 		Homo sapiens
SGAAAGYGAAASYNWWHH
DDWWNRSTTTCRCTTTCS		 SELEX
Mathelier et al.(2014)
MA0051.1 		0.971 0.971
IRF2
M09237_2.00 		Homo sapiens
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_HUMAN.H11MO.0.A 		0.971 0.971
IRF2
M09596_2.00 		Homo sapiens
NRAAVNRRAASB
VSTTYYNBTTYN		 Misc
Heinz et al.(2010)
Erythroblas-IRF2_GSE36985 		0.971 0.971
IRF2
M10892_2.00 		Homo sapiens
GAAAAGYGAAASY
RSTTTCRCTTTTC		 Transfac
Matys et al.(2006)
V$IRF2_01 		0.971 0.971
IRF2
M10893_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF2_Q6 		0.971 0.971
IRF2
M05546_2.00 		Homo sapiens
NGAAASYGAAAS
STTTCRSTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_Methyl-HT-SELEX 		0.971 0.971
Irf2
M00805_2.00 		Mus musculus
NDWNHGAAAV
BTTTCDNWHN		 PBM
Weirauch et al.(2013)
pTH2835 		0.952 0.952
Irf2
M09245_2.00 		Mus musculus
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_MOUSE.H11MO.0.B 		0.952 0.952
IRF1
M08142_2.00 		Homo sapiens
RWANNGAAASYGAAASYRNNN
NNNYRSTTTCRSTTTCNNTWY		 ChIP-seq
Mathelier et al.(2014)
MA0050.2 		0.781 0.781
IRF1
M09233_2.00 		Homo sapiens
NRAANNGAAASWGAAASHRN
NYDSTTTCWSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF1_HUMAN.H11MO.0.A 		0.781 0.781
Irf1
M09242_2.00 		Mus musculus
VRAANNGAAASYGAAASYVN
NBRSTTTCRSTTTCNNTTYB		 Misc
Kulakovskiy et al.(2013)
IRF1_MOUSE.H11MO.0.A 		0.781 0.781
IRF1
M09594_2.00 		Homo sapiens
GAAASTGAAASY
RSTTTCASTTTC		 Misc
Heinz et al.(2010)
PBMC-IRF1_GSE43036 		0.781 0.781
IRF1
M10879_2.00 		Homo sapiens
SAAAASYGAAASY
RSTTTCRSTTTTS		 Transfac
Matys et al.(2006)
V$IRF1_01 		0.781 0.781
IRF1
M10880_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_03 		0.781 0.781
IRF1
M10881_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_Q5 		0.781 0.781
IRF1
M10882_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_Q6 		0.781 0.781
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Brh_R001640 IRF 7 112

Links

Other IRF family TFs
Other Buceros rhinoceros TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_030_00294 Aquilegia coerulea Aquca_030_00294 I
Aquca_034_00423 Aquilegia coerulea Aquca_034_00423 I
AtMYB45 Arabidopsis thaliana AT3G48920 I
LAF1 Arabidopsis thaliana AT4G25560 I
AtMYB19 Arabidopsis thaliana AT5G52260 I
BGIOSGA016820 Oryza indica BGIOSGA016820 I
Bo1g040300 Brassica oleracea Bo1g040300 N
Bo3g023270 Brassica oleracea Bo3g023270 I
Bo6g122640 Brassica oleracea Bo6g122640 I
Bo7g110400 Brassica oleracea Bo7g110400 N
Bostr.7305s0041 Boechera stricta Bostr.7305s0041 I
Bostr.7867s0367 Boechera stricta Bostr.7867s0367 I
Bra013900 Brassica rapa Bra013900 N
Bra029129 Brassica rapa Bra029129 I
Bra035097 Brassica rapa Bra035097 I
BRADI3G49970 Brachypodium distachyon BRADI3G49970 I
BRADI5G16672 Brachypodium distachyon BRADI5G16672 I
Cagra.0094s0035 Capsella grandiflora Cagra.0094s0035 I
Cagra.23907s0010 Capsella grandiflora Cagra.23907s0010 I
Carubv10007732m.g Capsella rubella Carubv10007732m.g I
Carubv10027541m.g Capsella rubella Carubv10027541m.g I
Ca_19758 Cicer arietinum Ca_19758 I
chr5.CM0148.380.nc Lotus japonicus chr5.CM0148.380.nc I
Cla006288 Citrullus lanatus Cla006288 I
Cucsa.107740 Cucumis sativus Cucsa.107740 I
Eucgr.K00250 Eucalyptus grandis Eucgr.K00250 I
evm.TU.supercontig_107.47 Carica papaya evm.TU.supercontig_107.47 I
F775_08647 Aegilops tauschii F775_08647 I
AtMYB45 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001377 I
AtMYB18 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7001401 I
AtMYB19 Arabidopsis lyrata fgenesh2_kg.8__1111__AT5G52260.1 I
GLYMA09G25655 Glycine max GLYMA09G25655 I
GLYMA10G38110 Glycine max GLYMA10G38110 I
GLYMA16G31280 Glycine max GLYMA16G31280 I
GLYMA20G29710 Glycine max GLYMA20G29710 I
Gorai.007G011100 Gossypium raimondii Gorai.007G011100 I
Gorai.008G277900 Gossypium raimondii Gorai.008G277900 I
GRMZM2G170049 Zea mays GRMZM2G170049 I
GSMUA_Achr9G11190_001 Musa acuminata GSMUA_Achr9G11190_001 I
GSMUA_Achr9G25110_001 Musa acuminata GSMUA_Achr9G25110_001 I
gw1.277.32.1 Physcomitrella patens gw1.277.32.1 I
LPERR04G16000 Leersia perrieri LPERR04G16000 I
Lus10005739.g Linum usitatissimum Lus10005739.g I
Lus10027458.g Linum usitatissimum Lus10027458.g I
Lus10039213.g Linum usitatissimum Lus10039213.g I
mgf024114m Mimulus guttatus mgf024114m I
MLOC_13019 Hordeum vulgare MLOC_13019 I
MLOC_73614 Hordeum vulgare MLOC_73614 I
MTR_1g100667 Medicago truncatula MTR_1g100667 I
MTR_6g055910 Medicago truncatula MTR_6g055910 I
OBART04G19730 Oryza barthii OBART04G19730 I
OGLUM04G19590 Oryza glumaepatula OGLUM04G19590 I
OMERI04G16730 Oryza meridionalis OMERI04G16730 I
ONIVA04G17950 Oryza nivara ONIVA04G17950 I
OPUNC04G17450 Oryza punctata OPUNC04G17450 I
ORGLA04G0168700 Oryza glaberrima ORGLA04G0168700 I
ORGLA10G0151700 Oryza glaberrima ORGLA10G0151700 I
ORUFI04G21270 Oryza rufipogon ORUFI04G21270 I
OS04G0532800 Oryza sativa OS04G0532800 I
Pavir.Ab02417 Panicum virgatum Pavir.Ab02417 I
Pavir.Ga00879 Panicum virgatum Pavir.Ga00879 I
Pavir.Gb00734 Panicum virgatum Pavir.Gb00734 I
PK18276.1 Cannabis sativa PK18276.1 I
POPTR_0015s13190 Populus trichocarpa POPTR_0015s13190 I
Si012304m.g Setaria italica Si012304m.g I
TCM_015157 Theobroma cacao TCM_015157 I
Thhalv10014388m.g Eutrema salsugineum Thhalv10014388m.g I
Thhalv10026022m.g Eutrema salsugineum Thhalv10026022m.g N
Traes_2AL_2D4100475 Triticum aestivum Traes_2AL_2D4100475 I
Traes_2AL_962A9D448 Triticum aestivum Traes_2AL_962A9D448 I
Traes_2AL_AF9357B4C Triticum aestivum Traes_2AL_AF9357B4C N
Traes_2BL_03F3475CD Triticum aestivum Traes_2BL_03F3475CD I
Traes_2BL_35241DE8D Triticum aestivum Traes_2BL_35241DE8D I
Traes_2BL_604FE7639 Triticum aestivum Traes_2BL_604FE7639 I
Traes_2BL_7CEC6A8D7 Triticum aestivum Traes_2BL_7CEC6A8D7 I
Traes_6AL_D10CBA40D Triticum aestivum Traes_6AL_D10CBA40D I
Traes_6BL_CE61B9510 Triticum aestivum Traes_6BL_CE61B9510 I
Traes_6DL_A014E9069 Triticum aestivum Traes_6DL_A014E9069 I
TRIUR3_15020 Triticum urartu TRIUR3_15020 I
TRIUR3_32691 Triticum urartu TRIUR3_32691 I