LAF1 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT4G25560 T266498_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.668 0.688
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.668 0.688
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.668 0.688
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.665 0.656
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.665 0.656
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G25560.1 Myb 12 59
AT4G25560.1 Myb 65 110
AT4G25560.2 Myb 2 44

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.7867s0367 Boechera stricta Bostr.7867s0367 I 0.888
Cagra.23907s0010 Capsella grandiflora Cagra.23907s0010 I 0.888
Carubv10007732m.g Capsella rubella Carubv10007732m.g I 0.888
AtMYB18 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7001401 I 0.870
Bra019154 Brassica rapa Bra019154 N 0.869
Bo1g040300 Brassica oleracea Bo1g040300 N 0.856
Bo7g110400 Brassica oleracea Bo7g110400 N 0.854
Bra013900 Brassica rapa Bra013900 N 0.840
Bo3g023270 Brassica oleracea Bo3g023270 I 0.831
Bra029129 Brassica rapa Bra029129 I 0.831
Bostr.7305s0041 Boechera stricta Bostr.7305s0041 I 0.831
Thhalv10014388m.g Eutrema salsugineum Thhalv10014388m.g I 0.822
AtMYB19 Arabidopsis thaliana AT5G52260 I 0.814
AtMYB19 Arabidopsis lyrata fgenesh2_kg.8__1111__AT5G52260.1 I 0.814
Thhalv10026022m.g Eutrema salsugineum Thhalv10026022m.g N 0.794
Cagra.0094s0035 Capsella grandiflora Cagra.0094s0035 I 0.776
Carubv10027541m.g Capsella rubella Carubv10027541m.g I 0.776
Aquca_034_00423 Aquilegia coerulea Aquca_034_00423 I 0.738
Si012304m.g Setaria italica Si012304m.g I 0.736
Pavir.Ga00879 Panicum virgatum Pavir.Ga00879 I 0.736
Pavir.Gb00734 Panicum virgatum Pavir.Gb00734 I 0.736
MLOC_73614 Hordeum vulgare MLOC_73614 I 0.735
Traes_2AL_2D4100475 Triticum aestivum Traes_2AL_2D4100475 I 0.735
Traes_2BL_35241DE8D Triticum aestivum Traes_2BL_35241DE8D I 0.735
Traes_2BL_7CEC6A8D7 Triticum aestivum Traes_2BL_7CEC6A8D7 I 0.735
TRIUR3_15020 Triticum urartu TRIUR3_15020 I 0.735
MTR_1g100667 Medicago truncatula MTR_1g100667 I 0.734
GLYMA10G38110 Glycine max GLYMA10G38110 I 0.729
GLYMA20G29710 Glycine max GLYMA20G29710 I 0.729
TCM_015157 Theobroma cacao TCM_015157 I 0.729
BGIOSGA016820 Oryza indica BGIOSGA016820 I 0.727
OBART04G19730 Oryza barthii OBART04G19730 I 0.727
OGLUM04G19590 Oryza glumaepatula OGLUM04G19590 I 0.727
OMERI04G16730 Oryza meridionalis OMERI04G16730 I 0.727
ONIVA04G17950 Oryza nivara ONIVA04G17950 I 0.727
OPUNC04G17450 Oryza punctata OPUNC04G17450 I 0.727
ORGLA04G0168700 Oryza glaberrima ORGLA04G0168700 I 0.727
ORGLA10G0151700 Oryza glaberrima ORGLA10G0151700 I 0.727
ORUFI04G21270 Oryza rufipogon ORUFI04G21270 I 0.727
OS04G0532800 Oryza sativa OS04G0532800 I 0.727
GLYMA16G31280 Glycine max GLYMA16G31280 I 0.722
Ca_19758 Cicer arietinum Ca_19758 I 0.722
chr5.CM0148.380.nc Lotus japonicus chr5.CM0148.380.nc I 0.722
PK18276.1 Cannabis sativa PK18276.1 I 0.720
Gorai.007G011100 Gossypium raimondii Gorai.007G011100 I 0.718
MTR_6g055910 Medicago truncatula MTR_6g055910 I 0.717
Traes_2AL_AF9357B4C Triticum aestivum Traes_2AL_AF9357B4C N 0.715
BRADI5G16672 Brachypodium distachyon BRADI5G16672 I 0.714
Traes_2AL_962A9D448 Triticum aestivum Traes_2AL_962A9D448 I 0.714
Traes_2BL_03F3475CD Triticum aestivum Traes_2BL_03F3475CD I 0.714
Traes_2BL_604FE7639 Triticum aestivum Traes_2BL_604FE7639 I 0.714
Gorai.008G277900 Gossypium raimondii Gorai.008G277900 I 0.714
GLYMA09G25655 Glycine max GLYMA09G25655 I 0.712
Lus10005739.g Linum usitatissimum Lus10005739.g I 0.710
Pavir.Ab02417 Panicum virgatum Pavir.Ab02417 I 0.709
F775_08647 Aegilops tauschii F775_08647 I 0.706
GRMZM2G170049 Zea mays GRMZM2G170049 I 0.706
LPERR04G16000 Leersia perrieri LPERR04G16000 I 0.706
MLOC_13019 Hordeum vulgare MLOC_13019 I 0.706
Traes_6AL_D10CBA40D Triticum aestivum Traes_6AL_D10CBA40D I 0.706
Traes_6BL_CE61B9510 Triticum aestivum Traes_6BL_CE61B9510 I 0.706
Traes_6DL_A014E9069 Triticum aestivum Traes_6DL_A014E9069 I 0.706
TRIUR3_32691 Triticum urartu TRIUR3_32691 I 0.706
POPTR_0015s13190 Populus trichocarpa POPTR_0015s13190 I 0.705
Cla006288 Citrullus lanatus Cla006288 I 0.705
Lus10027458.g Linum usitatissimum Lus10027458.g I 0.705
Lus10039213.g Linum usitatissimum Lus10039213.g I 0.705
mgf024114m Mimulus guttatus mgf024114m I 0.704
BRADI3G49970 Brachypodium distachyon BRADI3G49970 I 0.701
OB04G26810 Oryza brachyantha OB04G26810 I 0.700
PRUPE_ppa019729mg Prunus persica PRUPE_ppa019729mg I 0.700
Si017947m.g Setaria italica Si017947m.g I 0.700
Pm019344 Prunus mume Pm019344 I 0.700
Sb06g023610 Sorghum bicolor Sb06g023610 I 0.699
Eucgr.K00250 Eucalyptus grandis Eucgr.K00250 I 0.699
evm.TU.supercontig_107.47 Carica papaya evm.TU.supercontig_107.47 I 0.698
gene13281-v1.0-hybrid Fragaria vesca gene13281-v1.0-hybrid I 0.698
MDP0000152575 Malus domestica MDP0000152575 I 0.696
GRMZM2G496770 Zea mays GRMZM2G496770 I 0.693
cassava26284.m1 Manihot esculenta cassava26284.m1 I 0.693
Lus10005740.g Linum usitatissimum Lus10005740.g I 0.692
BGIOSGA008698 Oryza indica BGIOSGA008698 I 0.690
F775_52175 Aegilops tauschii F775_52175 N 0.690
OB02G32950 Oryza brachyantha OB02G32950 I 0.690
OBART02G25570 Oryza barthii OBART02G25570 I 0.690
OGLUM02G26100 Oryza glumaepatula OGLUM02G26100 I 0.690
OMERI02G25080 Oryza meridionalis OMERI02G25080 I 0.690
ONIVA02G28010 Oryza nivara ONIVA02G28010 I 0.690
OPUNC02G23410 Oryza punctata OPUNC02G23410 I 0.690
Ciclev10006897m.g Citrus clementina Ciclev10006897m.g N 0.690
orange1.1g045400m.g Citrus sinensis orange1.1g045400m.g I 0.690
GSMUA_Achr8G11340_001 Musa acuminata GSMUA_Achr8G11340_001 I 0.688
Cagra.2337s0007 Capsella grandiflora Cagra.2337s0007 I 0.688
Carubv10018592m.g Capsella rubella Carubv10018592m.g I 0.688
SapurV1A.0754s0180 Salix purpurea SapurV1A.0754s0180 I 0.688
Bostr.18473s0062 Boechera stricta Bostr.18473s0062 I 0.687
Thhalv10010657m.g Eutrema salsugineum Thhalv10010657m.g I 0.687
PGSC0003DMG400014291 Solanum tuberosum PGSC0003DMG400014291 I 0.686
Cucsa.107740 Cucumis sativus Cucsa.107740 I 0.686
POPTR_0012s13260 Populus trichocarpa POPTR_0012s13260 I 0.684
VIT_01s0010g00410 Vitis vinifera VIT_01s0010g00410 I 0.684
SapurV1A.1253s0100 Salix purpurea SapurV1A.1253s0100 I 0.684
Bra035097 Brassica rapa Bra035097 I 0.683
Sb04g033680 Sorghum bicolor Sb04g033680 I 0.683
ORUFI02G26980 Oryza rufipogon ORUFI02G26980 I 0.681
MDP0000896053 Malus domestica MDP0000896053 I 0.681
Bo8g077360 Brassica oleracea Bo8g077360 I 0.680
Bra018027 Brassica rapa Bra018027 I 0.680
Cucsa.313950 Cucumis sativus Cucsa.313950 I 0.679
cassava11527.m1 Manihot esculenta cassava11527.m1 I 0.678
gw1.277.32.1 Physcomitrella patens gw1.277.32.1 I 0.677
Eucgr.A00996 Eucalyptus grandis Eucgr.A00996 I 0.676
ATMYB58 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001492 I 0.674
Cagra.0824s0021 Capsella grandiflora Cagra.0824s0021 I 0.674
Carubv10011190m.g Capsella rubella Carubv10011190m.g I 0.674
Thhalv10008436m.g Eutrema salsugineum Thhalv10008436m.g I 0.674
AtMYB45 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001377 I 0.672
GSMUA_Achr9G11190_001 Musa acuminata GSMUA_Achr9G11190_001 I 0.672
PDK_20s1606731g001 Phoenix dactylifera PDK_20s1606731g001 I 0.672
SELMODRAFT_437219 Selaginella moellendorffii SELMODRAFT_437219 I 0.671
F775_00835 Aegilops tauschii F775_00835 I 0.670
MLOC_56753 Hordeum vulgare MLOC_56753 I 0.670
Traes_2AS_40FA27AE7 Triticum aestivum Traes_2AS_40FA27AE7 I 0.670
TRIUR3_26358 Triticum urartu TRIUR3_26358 I 0.670
MYB55 Arabidopsis thaliana AT4G01680 D 0.668
MYB86 Arabidopsis thaliana AT5G26660 I 0.668
Bo2g156300 Brassica oleracea Bo2g156300 I 0.668
Bo7g095130 Brassica oleracea Bo7g095130 I 0.668
Bo9g004210 Brassica oleracea Bo9g004210 I 0.668
Bo9g010860 Brassica oleracea Bo9g010860 I 0.668
Bra036317 Brassica rapa Bra036317 I 0.668
Bra036588 Brassica rapa Bra036588 I 0.668
ATMYB86 Arabidopsis lyrata fgenesh2_kg.6__2630__AT5G26660.1 I 0.668
MYB55 Arabidopsis lyrata fgenesh2_kg.6__3543__AT4G01680.1 I 0.668
GLYMA02G00960 Glycine max GLYMA02G00960 I 0.668
GLYMA03G38410 Glycine max GLYMA03G38410 I 0.668
GLYMA03G38660 Glycine max GLYMA03G38660 I 0.668
GLYMA10G27940 Glycine max GLYMA10G27940 I 0.668
GLYMA10G28250 Glycine max GLYMA10G28250 I 0.668
GLYMA19G41010 Glycine max GLYMA19G41010 I 0.668
GLYMA19G41250 Glycine max GLYMA19G41250 I 0.668
GLYMA20G22230 Glycine max GLYMA20G22230 I 0.668
GSMUA_Achr2G01830_001 Musa acuminata GSMUA_Achr2G01830_001 I 0.668
MTR_1g085040 Medicago truncatula MTR_1g085040 I 0.668
MTR_1g085640 Medicago truncatula MTR_1g085640 I 0.668
MTR_7g110830 Medicago truncatula MTR_7g110830 I 0.668
MTR_7g111290 Medicago truncatula MTR_7g111290 I 0.668
POPTR_0002s18700 Populus trichocarpa POPTR_0002s18700 I 0.668
POPTR_0014s10680 Populus trichocarpa POPTR_0014s10680 I 0.668
Sb04g024000 Sorghum bicolor Sb04g024000 I 0.668
Si017851m.g Setaria italica Si017851m.g I 0.668
TCM_004965 Theobroma cacao TCM_004965 I 0.668
VIT_07s0005g02480 Vitis vinifera VIT_07s0005g02480 I 0.668
Ca_01055 Cicer arietinum Ca_01055 I 0.668
Ca_01072 Cicer arietinum Ca_01072 I 0.668
Ca_03564 Cicer arietinum Ca_03564 I 0.668
Ca_03589 Cicer arietinum Ca_03589 I 0.668
Cla001724 Citrullus lanatus Cla001724 I 0.668
cassava33008.m1 Manihot esculenta cassava33008.m1 I 0.668
mgf024107m Mimulus guttatus mgf024107m I 0.668
Bostr.29827s0161 Boechera stricta Bostr.29827s0161 I 0.668
Bostr.4825s0008 Boechera stricta Bostr.4825s0008 I 0.668
Cagra.0334s0011 Capsella grandiflora Cagra.0334s0011 I 0.668
Cagra.23492s0001 Capsella grandiflora Cagra.23492s0001 I 0.668
Carubv10001224m.g Capsella rubella Carubv10001224m.g I 0.668
Carubv10001308m.g Capsella rubella Carubv10001308m.g I 0.668
Ciclev10020144m.g Citrus clementina Ciclev10020144m.g I 0.668
Eucgr.H01337 Eucalyptus grandis Eucgr.H01337 I 0.668
Eucgr.K00555 Eucalyptus grandis Eucgr.K00555 I 0.668
Gorai.001G148500 Gossypium raimondii Gorai.001G148500 I 0.668
Gorai.004G147600 Gossypium raimondii Gorai.004G147600 I 0.668
Gorai.007G118200 Gossypium raimondii Gorai.007G118200 I 0.668
Gorai.008G133700 Gossypium raimondii Gorai.008G133700 I 0.668
Lus10038022.g Linum usitatissimum Lus10038022.g I 0.668
orange1.1g013300m.g Citrus sinensis orange1.1g013300m.g I 0.668
Pavir.Ab02021 Panicum virgatum Pavir.Ab02021 I 0.668
SapurV1A.0321s0070 Salix purpurea SapurV1A.0321s0070 I 0.668
SapurV1A.1077s0040 Salix purpurea SapurV1A.1077s0040 I 0.668
SapurV1A.3474s0020 Salix purpurea SapurV1A.3474s0020 I 0.668
Thhalv10004450m.g Eutrema salsugineum Thhalv10004450m.g I 0.668
Thhalv10028778m.g Eutrema salsugineum Thhalv10028778m.g I 0.668
chr1.CM0122.20.nc Lotus japonicus chr1.CM0122.20.nc I 0.668
chr1.CM0206.990.nd Lotus japonicus chr1.CM0206.990.nd I 0.668
chr5.CM0048.320.nd Lotus japonicus chr5.CM0048.320.nd I 0.668
AtMYB45 Arabidopsis thaliana AT3G48920 I 0.667
BGIOSGA024270 Oryza indica BGIOSGA024270 I 0.667
GRMZM2G172327 Zea mays GRMZM2G172327 I 0.667
LPERR07G12760 Leersia perrieri LPERR07G12760 I 0.667
OBART07G15150 Oryza barthii OBART07G15150 I 0.667
OMERI07G11910 Oryza meridionalis OMERI07G11910 I 0.667
OPUNC07G13970 Oryza punctata OPUNC07G13970 I 0.667
ORGLA07G0124200 Oryza glaberrima ORGLA07G0124200 I 0.667
ORUFI07G15620 Oryza rufipogon ORUFI07G15620 I 0.667
OS07G0497500 Oryza sativa OS07G0497500 I 0.667
Sb02g033830 Sorghum bicolor Sb02g033830 I 0.667
Sb09g003100 Sorghum bicolor Sb09g003100 I 0.667
Si030152m.g Setaria italica Si030152m.g I 0.667
Pavir.Ba00923 Panicum virgatum Pavir.Ba00923 I 0.667
Pavir.Bb02786 Panicum virgatum Pavir.Bb02786 I 0.667
PGSC0003DMG400018279 Solanum tuberosum PGSC0003DMG400018279 I 0.666
Solyc01g102340.2 Solanum lycopersicum Solyc01g102340.2 I 0.666
e_gw1.211.99.1 Physcomitrella patens e_gw1.211.99.1 I 0.666
AMTR_s00036p00107460 Amborella trichopoda AMTR_s00036p00107460 I 0.665
MYB58 Arabidopsis thaliana AT1G16490 D 0.665
MYB26 Arabidopsis thaliana AT3G13890 I 0.665
MYB26 Arabidopsis lyrata fgenesh2_kg.3__1496__AT3G13890.1 I 0.665
MYB26 Vitis vinifera VIT_09s0002g01670 I 0.665
Bostr.28625s0318 Boechera stricta Bostr.28625s0318 I 0.665
Cagra.0736s0026 Capsella grandiflora Cagra.0736s0026 I 0.665
Carubv10015767m.g Capsella rubella Carubv10015767m.g I 0.665
cassava21326.m1 Manihot esculenta cassava21326.m1 I 0.664
gw1.149.61.1 Physcomitrella patens gw1.149.61.1 I 0.664
BRADI2G36730 Brachypodium distachyon BRADI2G36730 I 0.663
F775_28584 Aegilops tauschii F775_28584 I 0.663
MLOC_59663 Hordeum vulgare MLOC_59663 I 0.663
Traes_1AS_1EE692FDC Triticum aestivum Traes_1AS_1EE692FDC I 0.663
Traes_1BS_92EA1F290 Triticum aestivum Traes_1BS_92EA1F290 I 0.663
Traes_1DS_5BAD8947E Triticum aestivum Traes_1DS_5BAD8947E I 0.663
Cucsa.127860 Cucumis sativus Cucsa.127860 I 0.663
Bo6g122640 Brassica oleracea Bo6g122640 I 0.662
GSMUA_Achr1G25120_001 Musa acuminata GSMUA_Achr1G25120_001 I 0.662
Eucgr.A02796 Eucalyptus grandis Eucgr.A02796 I 0.662
gene27001-v1.0-hybrid Fragaria vesca gene27001-v1.0-hybrid I 0.662
chr5.CM0048.130.nc Lotus japonicus chr5.CM0048.130.nc I 0.662
TRIUR3_15022 Triticum urartu TRIUR3_15022 N 0.661