ORGLA01G0366500 (Oryza glaberrima)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 ORGLA01G0366500 T245716_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.744 0.744
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.732 0.732
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA01G0366500.1 LOB 6 87

Links

Other LOB family TFs
Other Oryza glaberrima TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30169.m006340 Ricinus communis 30169.m006340 I 0.756
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.768
LBD4 Arabidopsis thaliana AT1G31320 D 0.744
LBD12 Arabidopsis thaliana AT2G30130 I 0.805
BGIOSGA000185 Oryza indica BGIOSGA000185 N 0.878
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.732
BGIOSGA018244 Oryza indica BGIOSGA018244 I 0.758
BGIOSGA018245 Oryza indica BGIOSGA018245 I 0.758
Bo4g059700 Brassica oleracea Bo4g059700 I 0.805
Bo7g041000 Brassica oleracea Bo7g041000 I 0.744
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.744
Bra014907 Brassica rapa Bra014907 I 0.744
Bra018335 Brassica rapa Bra018335 I 0.805
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.732
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.744
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.744
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.805
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.817
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.768
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.756
Ca_08998 Cicer arietinum Ca_08998 I 0.756
Ca_13388 Cicer arietinum Ca_13388 I 0.829
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.756
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.780
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.756
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.768
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.793
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.829
Cla007354 Citrullus lanatus Cla007354 I 0.829
Cla009336 Citrullus lanatus Cla009336 I 0.780
Cla013598 Citrullus lanatus Cla013598 I 0.780
Cla013678 Citrullus lanatus Cla013678 I 0.780
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.780
Cucsa.144430 Cucumis sativus Cucsa.144430 I 0.829
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.756
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.817
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.805
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.717
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.817
e_gw1.192.35.1 Physcomitrella patens e_gw1.192.35.1 I 0.707
F775_08326 Aegilops tauschii F775_08326 I 0.768
F775_24149 Aegilops tauschii F775_24149 I 0.878
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.744
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.805
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.768
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.817
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.829
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.744
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.756
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.793
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.756
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.732
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.817
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.756
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.756
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.841
Gorai.009G112900 Gossypium raimondii Gorai.009G112900 I 0.720
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.768
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.768
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.829
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.780
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.890
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.732
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I 0.756
GSMUA_Achr3G10050_001 Musa acuminata GSMUA_Achr3G10050_001 I 0.780
GSMUA_Achr4G32000_001 Musa acuminata GSMUA_Achr4G32000_001 I 0.756
GSMUA_Achr5G29470_001 Musa acuminata GSMUA_Achr5G29470_001 I 0.793
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I 0.768
GSMUA_Achr9G18030_001 Musa acuminata GSMUA_Achr9G18030_001 I 0.817
LPERR05G10020 Leersia perrieri LPERR05G10020 I 0.758
Lus10007525.g Linum usitatissimum Lus10007525.g I 0.768
Lus10017431.g Linum usitatissimum Lus10017431.g I 0.768
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.768
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.829
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.732
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.780
MDP0000121203 Malus domestica MDP0000121203 I 0.768
MDP0000155138 Malus domestica MDP0000155138 I 0.707
MDP0000265429 Malus domestica MDP0000265429 I 0.841
MDP0000268890 Malus domestica MDP0000268890 I 0.756
MDP0000277239 Malus domestica MDP0000277239 I 0.756
MDP0000284409 Malus domestica MDP0000284409 I 0.756
MDP0000861160 Malus domestica MDP0000861160 I 0.817
mgf018189m Mimulus guttatus mgf018189m I 0.841
mgf022958m Mimulus guttatus mgf022958m I 0.768
mgf026046m Mimulus guttatus mgf026046m I 0.768
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.756
MLOC_54949 Hordeum vulgare MLOC_54949 I 0.727
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.805
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.768
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.780
OB05G20740 Oryza brachyantha OB05G20740 I 0.758
OBART05G12620 Oryza barthii OBART05G12620 I 0.902
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.732
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I 0.758
OMERI01G39870 Oryza meridionalis OMERI01G39870 I 0.988
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.732
OMERI05G11330 Oryza meridionalis OMERI05G11330 I 0.758
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.732
ONIVA05G13090 Oryza nivara ONIVA05G13090 I 0.758
ONIVA08G12870 Oryza nivara ONIVA08G12870 I 0.951
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.707
OPUNC05G10670 Oryza punctata OPUNC05G10670 I 0.758
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.768
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.829
orange1.1g038565m.g Citrus sinensis orange1.1g038565m.g I 0.720
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.756
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.902
ORUFI01G46340 Oryza rufipogon ORUFI01G46340 I 0.973
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.732
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I 0.758
OS05G0346800 Oryza sativa OS05G0346800 I 0.758
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I 0.737
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.744
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.744
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.829
Pavir.J21476 Panicum virgatum Pavir.J21476 I 0.737
Pavir.J22399 Panicum virgatum Pavir.J22399 I 0.737
PDK_20s1342451g001 Phoenix dactylifera PDK_20s1342451g001 I 0.805
PDK_20s1728161g001 Phoenix dactylifera PDK_20s1728161g001 I 0.817
PDK_20s1810211g001 Phoenix dactylifera PDK_20s1810211g001 I 0.854
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.780
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.780
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.793
PGSC0003DMG402023851 Solanum tuberosum PGSC0003DMG402023851 I 0.732
PK11564.1 Cannabis sativa PK11564.1 I 0.768
PK24688.1 Cannabis sativa PK24688.1 I 0.768
Pm011040 Prunus mume Pm011040 I 0.756
Pm018982 Prunus mume Pm018982 I 0.854
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I 0.793
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.756
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.829
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.817
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.817
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.756
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.768
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.841
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.817
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.780
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.829
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.732
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.829
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.744
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.902
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.744
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.756
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.744
Si011647m.g Setaria italica Si011647m.g I 0.756
Si024229m.g Setaria italica Si024229m.g I 0.902
Si026864m.g Setaria italica Si026864m.g I 0.817
Si037583m.g Setaria italica Si037583m.g I 0.744
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.768
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.780
TCM_042212 Theobroma cacao TCM_042212 I 0.817
TCM_042447 Theobroma cacao TCM_042447 I 0.841
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.744
Thhalv10017267m.g Eutrema salsugineum Thhalv10017267m.g I 0.707
Traes_1AL_DB7593004 Triticum aestivum Traes_1AL_DB7593004 I 0.727
Traes_1BL_04EFBAECF Triticum aestivum Traes_1BL_04EFBAECF I 0.727
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.768
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.756
TRIUR3_27421 Triticum urartu TRIUR3_27421 I 0.878
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.768
ASL5 Vitis vinifera VIT_06s0004g07200 I 0.829
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.817
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.768