MDP0000277239 (Malus domestica)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 MDP0000277239 T247109_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.758 0.758
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000277239 LOB 15 113

Links

Other LOB family TFs
Other Malus domestica TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.957
PK17019.1 Cannabis sativa PK17019.1 I 0.853
PK21617.1 Cannabis sativa PK21617.1 I 0.804
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.788
MDP0000121203 Malus domestica MDP0000121203 I 0.788
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.788
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.788
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.788
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.788
ORUFI01G46340 Oryza rufipogon ORUFI01G46340 I 0.787
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.778
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.778
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.778
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.778
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.778
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.778
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.778
TCM_029315 Theobroma cacao TCM_029315 I 0.778
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.778
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.778
MDP0000284409 Malus domestica MDP0000284409 I 0.768
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.768
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.768
Ca_06548 Cicer arietinum Ca_06548 I 0.768
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.768
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.768
30169.m006340 Ricinus communis 30169.m006340 I 0.768
Pm011040 Prunus mume Pm011040 I 0.768
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.768
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.768
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.768
OMERI01G39870 Oryza meridionalis OMERI01G39870 I 0.768
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.768
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.768
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.768
MDP0000268890 Malus domestica MDP0000268890 I 0.768
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.768
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.768
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.758
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.758
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.758
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.758
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.758
LBD4 Arabidopsis thaliana AT1G31320 D 0.758
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.758
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.758
PK24688.1 Cannabis sativa PK24688.1 I 0.758
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.758
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.758
Bo7g041000 Brassica oleracea Bo7g041000 I 0.758
TCM_032557 Theobroma cacao TCM_032557 I 0.758
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.758
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.758
Bra014907 Brassica rapa Bra014907 I 0.758
ORGLA01G0366500 Oryza glaberrima ORGLA01G0366500 I 0.756
PK18922.1 Cannabis sativa PK18922.1 I 0.754
F775_33210 Aegilops tauschii F775_33210 I 0.753
ONIVA08G12870 Oryza nivara ONIVA08G12870 I 0.753
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.747
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.747
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.747
Cla013678 Citrullus lanatus Cla013678 I 0.747
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.747
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.747
PK11564.1 Cannabis sativa PK11564.1 I 0.747
Ca_13575 Cicer arietinum Ca_13575 I 0.747
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.747
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.747
MDP0000167580 Malus domestica MDP0000167580 I 0.740
mgf026046m Mimulus guttatus mgf026046m I 0.737
chr3.CM0176.110.nc Lotus japonicus chr3.CM0176.110.nc I 0.737
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.737
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.737
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.737
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.727
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.727
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.727
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.727
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.727
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.726
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.721
PK13228.1 Cannabis sativa PK13228.1 I 0.719
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.717
TRIUR3_27421 Triticum urartu TRIUR3_27421 I 0.717
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.717
F775_24149 Aegilops tauschii F775_24149 I 0.717
Cla009336 Citrullus lanatus Cla009336 I 0.717
e_gw1.192.35.1 Physcomitrella patens e_gw1.192.35.1 I 0.717
mgf022958m Mimulus guttatus mgf022958m I 0.717
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.707
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.707
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I 0.707
Ciclev10006208m.g Citrus clementina Ciclev10006208m.g I 0.707
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.707
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.707
PK29334.1 Cannabis sativa PK29334.1 I 0.703