PK13228.1 (Cannabis sativa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 PK13228.1 T247384_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.828 0.828
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.734 0.734
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.719 0.719
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK13228.1 LOB 8 71

Links

Other LOB family TFs
Other Cannabis sativa TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla020438 Citrullus lanatus Cla020438 I 0.906
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.859
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.859
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.859
TCM_000560 Theobroma cacao TCM_000560 I 0.859
mgf004296m Mimulus guttatus mgf004296m I 0.859
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.859
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.844
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.828
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.828
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.828
Cla005851 Citrullus lanatus Cla005851 I 0.828
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.828
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.828
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.828
BRADI1G14677 Brachypodium distachyon BRADI1G14677 N 0.812
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.812
Si036905m.g Setaria italica Si036905m.g I 0.812
Ca_02124 Cicer arietinum Ca_02124 I 0.812
MDP0000643326 Malus domestica MDP0000643326 I 0.812
MDP0000777060 Malus domestica MDP0000777060 I 0.812
PK18922.1 Cannabis sativa PK18922.1 I 0.807
Bo4g151770 Brassica oleracea Bo4g151770 I 0.797
Bra032153 Brassica rapa Bra032153 I 0.797
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.797
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.796
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.787
LBD6 Oryza indica BGIOSGA004955 I 0.781
F775_21760 Aegilops tauschii F775_21760 I 0.781
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.781
GRMZM2G154320 Zea mays GRMZM2G154320 N 0.781
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.781
OB01G48740 Oryza brachyantha OB01G48740 I 0.781
OBART01G39990 Oryza barthii OBART01G39990 I 0.781
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.781
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.781
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.781
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.781
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.781
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.781
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.781
LBD6 Oryza sativa OS01G0889400 I 0.781
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.781
Si002599m.g Setaria italica Si002599m.g I 0.781
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.781
Ca_02125 Cicer arietinum Ca_02125 I 0.781
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.781
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.781
SapurV1A.0811s0010 Salix purpurea SapurV1A.0811s0010 I 0.781
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.766
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.766
F775_25656 Aegilops tauschii F775_25656 I 0.766
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.766
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.766
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.766
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.766
OB01G14220 Oryza brachyantha OB01G14220 I 0.766
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.766
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.766
Si002632m.g Setaria italica Si002632m.g I 0.766
Ca_20200 Cicer arietinum Ca_20200 I 0.766
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.766
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.766
MTR_3g452660 Medicago truncatula MTR_3g452660 N 0.750
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.750
LOB Vitis vinifera VIT_17s0000g09010 I 0.750
Ca_24372 Cicer arietinum Ca_24372 I 0.750
30147.m013890 Ricinus communis 30147.m013890 I 0.750
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.750
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.750
MDP0000848210 Malus domestica MDP0000848210 I 0.750
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.750
F775_33210 Aegilops tauschii F775_33210 I 0.740
LBD25 Arabidopsis thaliana AT3G27650 I 0.734
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.734
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.734
Ca_07463 Cicer arietinum Ca_07463 I 0.734
Ca_18206 Cicer arietinum Ca_18206 N 0.734
Cla010600 Citrullus lanatus Cla010600 I 0.734
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.734
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.734
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.734
Bo2g144870 Brassica oleracea Bo2g144870 I 0.719
Bra033019 Brassica rapa Bra033019 I 0.719
GRMZM2G096064 Zea mays GRMZM2G096064 I 0.719
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.719
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.719
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.719
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.719
MDP0000121203 Malus domestica MDP0000121203 I 0.719
MDP0000277239 Malus domestica MDP0000277239 I 0.719
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.719
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.719
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.719
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I 0.717
PK21617.1 Cannabis sativa PK21617.1 I 0.717
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.708
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.705
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.703
GSMUA_Achr2G23130_001 Musa acuminata GSMUA_Achr2G23130_001 I 0.703
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.703
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.703
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.703
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.703
SELMODRAFT_59646 Selaginella moellendorffii SELMODRAFT_59646 I 0.703
SELMODRAFT_69267 Selaginella moellendorffii SELMODRAFT_69267 I 0.703
Ca_13388 Cicer arietinum Ca_13388 I 0.703
Pm011040 Prunus mume Pm011040 I 0.703
30169.m006340 Ricinus communis 30169.m006340 I 0.703
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.703
mgf003146m Mimulus guttatus mgf003146m I 0.703
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.703
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.703
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.703
MDP0000268890 Malus domestica MDP0000268890 I 0.703
MDP0000284409 Malus domestica MDP0000284409 I 0.703
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.703