CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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mgf003146m
(
Mimulus guttatus
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
mgf003146m
T246575_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.828
0.828
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.727
0.727
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf003146m
LOB
17
116
PCAACKFLRRKCQPTLCIFAPYFPPEDPTKFSNVHRIFGASNVSKLLNDIMPHQREDAVNSLAYEAEARLKDPVYGCVGAISLLQSQVAQLQKELDATNA
Links
Other
LOB
family TFs
Other
Mimulus guttatus
TFs
197 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PGSC0003DMG400012629
Solanum tuberosum
PGSC0003DMG400012629
I
0.869
Solyc02g086480.1
Solanum lycopersicum
Solyc02g086480.1
I
0.869
LjSGA_042891.1
Lotus japonicus
LjSGA_042891.1
I
0.869
GLYMA05G08870
Glycine max
GLYMA05G08870
I
0.859
GLYMA19G00390
Glycine max
GLYMA19G00390
I
0.859
MTR_7g033800
Medicago truncatula
MTR_7g033800
I
0.859
POPTR_0001s35280
Populus trichocarpa
POPTR_0001s35280
I
0.859
PRUPE_ppa018381mg
Prunus persica
PRUPE_ppa018381mg
I
0.859
LBD25
Vitis vinifera
VIT_14s0066g00680
I
0.859
Cla010600
Citrullus lanatus
Cla010600
I
0.859
Pm015649
Prunus mume
Pm015649
I
0.859
29917.m001993
Ricinus communis
29917.m001993
I
0.859
cassava12464.valid.m1
Manihot esculenta
cassava12464.valid.m1
I
0.859
Cucsa.011300
Cucumis sativus
Cucsa.011300
I
0.859
Eucgr.J02237
Eucalyptus grandis
Eucgr.J02237
I
0.859
Gorai.012G063800
Gossypium raimondii
Gorai.012G063800
I
0.859
Lus10022264.g
Linum usitatissimum
Lus10022264.g
I
0.859
SapurV1A.1328s0080
Salix purpurea
SapurV1A.1328s0080
I
0.859
PK26472.1
Cannabis sativa
PK26472.1
I
0.859
GLYMA16G07770
Glycine max
GLYMA16G07770
I
0.848
GLYMA19G12650
Glycine max
GLYMA19G12650
I
0.848
PGSC0003DMG400006914
Solanum tuberosum
PGSC0003DMG400006914
I
0.848
Solyc02g067800.2
Solanum lycopersicum
Solyc02g067800.2
I
0.848
TCM_016952
Theobroma cacao
TCM_016952
I
0.848
Ca_24372
Cicer arietinum
Ca_24372
I
0.848
Cla017388
Citrullus lanatus
Cla017388
I
0.848
Cucsa.339980
Cucumis sativus
Cucsa.339980
I
0.848
Eucgr.I01750
Eucalyptus grandis
Eucgr.I01750
I
0.848
evm.TU.supercontig_108.62
Carica papaya
evm.TU.supercontig_108.62
I
0.848
gene28478-v1.0-hybrid
Fragaria vesca
gene28478-v1.0-hybrid
I
0.848
gene31797-v1.0-hybrid
Fragaria vesca
gene31797-v1.0-hybrid
I
0.848
MDP0000848210
Malus domestica
MDP0000848210
I
0.848
Ciclev10017006m.g
Citrus clementina
Ciclev10017006m.g
I
0.838
Gorai.006G033100
Gossypium raimondii
Gorai.006G033100
I
0.838
orange1.1g031572m.g
Citrus sinensis
orange1.1g031572m.g
I
0.838
LOB
Arabidopsis thaliana
AT5G63090
D
0.828
Bo3g104760
Brassica oleracea
Bo3g104760
I
0.828
Bra038606
Brassica rapa
Bra038606
I
0.828
GLYMA05G02530
Glycine max
GLYMA05G02530
I
0.828
GLYMA17G09380
Glycine max
GLYMA17G09380
I
0.828
LOB
Arabidopsis lyrata
scaffold_802995.1
I
0.828
TCM_012190
Theobroma cacao
TCM_012190
I
0.828
LOB
Vitis vinifera
VIT_17s0000g09010
I
0.828
Cla019510
Citrullus lanatus
Cla019510
I
0.828
30147.m013890
Ricinus communis
30147.m013890
I
0.828
cassava19770.m1
Manihot esculenta
cassava19770.m1
I
0.828
cassava33952.m1
Manihot esculenta
cassava33952.m1
I
0.828
Cucsa.196600
Cucumis sativus
Cucsa.196600
I
0.828
Aquca_061_00084
Aquilegia coerulea
Aquca_061_00084
I
0.828
Bostr.0568s0498
Boechera stricta
Bostr.0568s0498
I
0.828
Cagra.5118s0045
Capsella grandiflora
Cagra.5118s0045
I
0.828
Carubv10028397m.g
Capsella rubella
Carubv10028397m.g
I
0.828
evm.TU.supercontig_110.17
Carica papaya
evm.TU.supercontig_110.17
I
0.828
Lus10027676.g
Linum usitatissimum
Lus10027676.g
I
0.828
Lus10039940.g
Linum usitatissimum
Lus10039940.g
I
0.828
MDP0000130659
Malus domestica
MDP0000130659
I
0.828
MDP0000254288
Malus domestica
MDP0000254288
I
0.828
Thhalv10004979m.g
Eutrema salsugineum
Thhalv10004979m.g
I
0.828
LBD25
Arabidopsis thaliana
AT3G27650
I
0.818
Bo9g017470
Brassica oleracea
Bo9g017470
I
0.818
GLYMA04G36080
Glycine max
GLYMA04G36080
I
0.818
GLYMA06G18861
Glycine max
GLYMA06G18861
I
0.818
MTR_4g105170
Medicago truncatula
MTR_4g105170
I
0.818
MTR_6g005070
Medicago truncatula
MTR_6g005070
I
0.818
PGSC0003DMG400018112
Solanum tuberosum
PGSC0003DMG400018112
I
0.818
POPTR_0012s08540
Populus trichocarpa
POPTR_0012s08540
I
0.818
POPTR_0015s09370
Populus trichocarpa
POPTR_0015s09370
I
0.818
PRUPE_ppa023059mg
Prunus persica
PRUPE_ppa023059mg
I
0.818
Ca_08824
Cicer arietinum
Ca_08824
I
0.818
Pm024312
Prunus mume
Pm024312
I
0.818
cassava3724.m1
Manihot esculenta
cassava3724.m1
I
0.818
mgf024603m
Mimulus guttatus
mgf024603m
I
0.818
Cagra.5575s0004
Capsella grandiflora
Cagra.5575s0004
I
0.818
Carubv10018238m.g
Capsella rubella
Carubv10018238m.g
I
0.818
Ciclev10022371m.g
Citrus clementina
Ciclev10022371m.g
I
0.818
Gorai.007G075700
Gossypium raimondii
Gorai.007G075700
I
0.818
orange1.1g036845m.g
Citrus sinensis
orange1.1g036845m.g
I
0.818
SapurV1A.0011s0490
Salix purpurea
SapurV1A.0011s0490
I
0.818
Thhalv10005120m.g
Eutrema salsugineum
Thhalv10005120m.g
I
0.818
PK21510.1
Cannabis sativa
PK21510.1
I
0.818
chr1.CM0171.410.nc
Lotus japonicus
chr1.CM0171.410.nc
I
0.818
chr2.LjT30P12.80.nc
Lotus japonicus
chr2.LjT30P12.80.nc
I
0.818
Bra025294
Brassica rapa
Bra025294
I
0.808
LBD25
Arabidopsis lyrata
fgenesh2_kg.5__545__AT3G27650.1
I
0.808
MTR_3g077240
Medicago truncatula
MTR_3g077240
I
0.808
MTR_6g005080
Medicago truncatula
MTR_6g005080
I
0.808
Solyc03g112430.1
Solanum lycopersicum
Solyc03g112430.1
I
0.808
Bostr.0556s0446
Boechera stricta
Bostr.0556s0446
I
0.808
Eucgr.K02809
Eucalyptus grandis
Eucgr.K02809
I
0.808
SapurV1A.1247s0030
Salix purpurea
SapurV1A.1247s0030
I
0.808
AMTR_s00083p00067130
Amborella trichopoda
AMTR_s00083p00067130
I
0.806
AC233943.1_FG002
Zea mays
AC233943.1_FG002
I
0.798
Bo7g085860
Brassica oleracea
Bo7g085860
I
0.798
Bra035860
Brassica rapa
Bra035860
I
0.798
LPERR01G04140
Leersia perrieri
LPERR01G04140
I
0.798
OB01G14220
Oryza brachyantha
OB01G14220
I
0.798
OMERI01G04420
Oryza meridionalis
OMERI01G04420
I
0.798
Sb03g004590
Sorghum bicolor
Sb03g004590
I
0.798
Si002632m.g
Setaria italica
Si002632m.g
I
0.798
Ca_07463
Cicer arietinum
Ca_07463
I
0.798
Aquca_011_00559
Aquilegia coerulea
Aquca_011_00559
I
0.798
Pavir.Eb00458
Panicum virgatum
Pavir.Eb00458
I
0.798
Pavir.J38993
Panicum virgatum
Pavir.J38993
I
0.798
Bo9g008330
Brassica oleracea
Bo9g008330
I
0.788
Bra039072
Brassica rapa
Bra039072
I
0.788
F775_25656
Aegilops tauschii
F775_25656
I
0.788
OBART01G04470
Oryza barthii
OBART01G04470
I
0.788
OGLUM01G04900
Oryza glumaepatula
OGLUM01G04900
I
0.788
ONIVA01G04930
Oryza nivara
ONIVA01G04930
I
0.788
ORGLA01G0040900
Oryza glaberrima
ORGLA01G0040900
I
0.788
ORUFI01G04670
Oryza rufipogon
ORUFI01G04670
I
0.788
OS01G0169400
Oryza sativa
OS01G0169400
I
0.788
mgf016361m
Mimulus guttatus
mgf016361m
I
0.788
Bo2g144870
Brassica oleracea
Bo2g144870
I
0.778
Bra033019
Brassica rapa
Bra033019
I
0.778
BRADI2G04270
Brachypodium distachyon
BRADI2G04270
I
0.778
GLYMA13G26020
Glycine max
GLYMA13G26020
I
0.778
GLYMA15G36310
Glycine max
GLYMA15G36310
I
0.778
MTR_8g040900
Medicago truncatula
MTR_8g040900
I
0.778
VIT_00s0215g00010
Vitis vinifera
VIT_00s0215g00010
I
0.778
Ca_20200
Cicer arietinum
Ca_20200
I
0.778
Cla003499
Citrullus lanatus
Cla003499
I
0.778
PK18922.1
Cannabis sativa
PK18922.1
I
0.772
Traes_1DL_1290B6A52
Triticum aestivum
Traes_1DL_1290B6A52
I
0.769
Cucsa.098680
Cucumis sativus
Cucsa.098680
I
0.768
PGSC0003DMG400027078
Solanum tuberosum
PGSC0003DMG400027078
I
0.758
SELMODRAFT_59324
Selaginella moellendorffii
SELMODRAFT_59324
I
0.758
SELMODRAFT_68988
Selaginella moellendorffii
SELMODRAFT_68988
I
0.758
Solyc06g071660.1
Solanum lycopersicum
Solyc06g071660.1
I
0.758
F775_33210
Aegilops tauschii
F775_33210
I
0.753
AMTR_s00066p00120340
Amborella trichopoda
AMTR_s00066p00120340
I
0.747
PGSC0003DMG400000974
Solanum tuberosum
PGSC0003DMG400000974
I
0.747
Solyc03g063140.2
Solanum lycopersicum
Solyc03g063140.2
I
0.747
gw1.170.36.1
Physcomitrella patens
gw1.170.36.1
I
0.747
gw1.170.40.1
Physcomitrella patens
gw1.170.40.1
I
0.747
BGIOSGA002306
Oryza indica
BGIOSGA002306
I
0.738
GLYMA11G17890
Glycine max
GLYMA11G17890
I
0.737
POPTR_0008s07930
Populus trichocarpa
POPTR_0008s07930
I
0.737
POPTR_0010s18460
Populus trichocarpa
POPTR_0010s18460
I
0.737
PRUPE_ppa027059mg
Prunus persica
PRUPE_ppa027059mg
I
0.737
Solyc11g008830.1
Solanum lycopersicum
Solyc11g008830.1
I
0.737
gw1.71.84.1
Physcomitrella patens
gw1.71.84.1
I
0.737
mgf014755m
Mimulus guttatus
mgf014755m
I
0.737
Aquca_058_00006
Aquilegia coerulea
Aquca_058_00006
I
0.737
Eucgr.C02148
Eucalyptus grandis
Eucgr.C02148
I
0.737
gene21541-v1.0-hybrid
Fragaria vesca
gene21541-v1.0-hybrid
I
0.737
MDP0000273432
Malus domestica
MDP0000273432
I
0.737
MDP0000643326
Malus domestica
MDP0000643326
I
0.737
SapurV1A.0093s0490
Salix purpurea
SapurV1A.0093s0490
I
0.737
SapurV1A.0164s0090
Salix purpurea
SapurV1A.0164s0090
I
0.737
GSMUA_Achr7G23710_001
Musa acuminata
GSMUA_Achr7G23710_001
I
0.733
LBD6
Arabidopsis thaliana
AT1G65620
D
0.727
Bo2g051420
Brassica oleracea
Bo2g051420
I
0.727
Bra039733
Brassica rapa
Bra039733
I
0.727
AS2
Arabidopsis lyrata
fgenesh2_kg.2__796__AT1G65620.2
I
0.727
TCM_024217
Theobroma cacao
TCM_024217
I
0.727
AS2
Vitis vinifera
VIT_00s0340g00090
I
0.727
Cla005851
Citrullus lanatus
Cla005851
I
0.727
29929.m004500
Ricinus communis
29929.m004500
I
0.727
cassava1141.valid.m1
Manihot esculenta
cassava1141.valid.m1
I
0.727
Cucsa.178830
Cucumis sativus
Cucsa.178830
I
0.727
gw1.12.172.1
Physcomitrella patens
gw1.12.172.1
I
0.727
Bostr.26959s0351
Boechera stricta
Bostr.26959s0351
I
0.727
Cagra.10809s0001
Capsella grandiflora
Cagra.10809s0001
I
0.727
Carubv10020974m.g
Capsella rubella
Carubv10020974m.g
I
0.727
evm.TU.supercontig_39.110
Carica papaya
evm.TU.supercontig_39.110
I
0.727
Gorai.007G350300
Gossypium raimondii
Gorai.007G350300
I
0.727
Thhalv10019572m.g
Eutrema salsugineum
Thhalv10019572m.g
I
0.727
BGIOSGA018046
Oryza indica
BGIOSGA018046
I
0.717
F775_21760
Aegilops tauschii
F775_21760
I
0.717
GSMUA_Achr6G04670_001
Musa acuminata
GSMUA_Achr6G04670_001
I
0.717
MLOC_61156
Hordeum vulgare
MLOC_61156
I
0.717
OB05G24560
Oryza brachyantha
OB05G24560
I
0.717
OGLUM05G17630
Oryza glumaepatula
OGLUM05G17630
I
0.717
ORGLA05G0143500
Oryza glaberrima
ORGLA05G0143500
I
0.717
ORUFI05G17830
Oryza rufipogon
ORUFI05G17830
I
0.717
OS05G0417000
Oryza sativa
OS05G0417000
I
0.717
Traes_1AL_4B89B33E3
Triticum aestivum
Traes_1AL_4B89B33E3
I
0.717
Bo2g167820
Brassica oleracea
Bo2g167820
I
0.707
BRADI2G25270
Brachypodium distachyon
BRADI2G25270
I
0.707
GRMZM2G118250
Zea mays
GRMZM2G118250
I
0.707
Sb01g014650
Sorghum bicolor
Sb01g014650
I
0.707
Sb03g042310
Sorghum bicolor
Sb03g042310
I
0.707
Si002599m.g
Setaria italica
Si002599m.g
I
0.707
Si024114m.g
Setaria italica
Si024114m.g
I
0.707
Solyc02g090410.2
Solanum lycopersicum
Solyc02g090410.2
I
0.707
cassava16840.m1
Manihot esculenta
cassava16840.m1
I
0.707
Ciclev10017910m.g
Citrus clementina
Ciclev10017910m.g
I
0.707
Lus10001139.g
Linum usitatissimum
Lus10001139.g
I
0.707
Lus10013610.g
Linum usitatissimum
Lus10013610.g
I
0.707
Lus10016769.g
Linum usitatissimum
Lus10016769.g
I
0.707
Lus10022463.g
Linum usitatissimum
Lus10022463.g
I
0.707
orange1.1g027472m.g
Citrus sinensis
orange1.1g027472m.g
I
0.707
Pavir.Ea03589
Panicum virgatum
Pavir.Ea03589
I
0.707
Pavir.J16692
Panicum virgatum
Pavir.J16692
I
0.707
Pavir.J22284
Panicum virgatum
Pavir.J22284
I
0.707
PK13228.1
Cannabis sativa
PK13228.1
I
0.703