Cagra.5575s0004 (Capsella grandiflora)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cagra.5575s0004 T246741_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.808 0.808
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.5575s0004.1.p LOB 8 106

Links

Other LOB family TFs
Other Capsella grandiflora TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 1.000
LBD25 Arabidopsis thaliana AT3G27650 I 0.990
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.990
Bra025294 Brassica rapa Bra025294 I 0.980
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.980
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.980
Bo9g008330 Brassica oleracea Bo9g008330 I 0.960
Bra039072 Brassica rapa Bra039072 I 0.960
Bo7g085860 Brassica oleracea Bo7g085860 I 0.949
Bo2g144870 Brassica oleracea Bo2g144870 I 0.939
Bra033019 Brassica rapa Bra033019 I 0.939
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.889
TCM_016952 Theobroma cacao TCM_016952 I 0.879
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.879
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.879
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.879
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.879
MDP0000848210 Malus domestica MDP0000848210 I 0.879
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.879
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.869
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.869
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.869
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.869
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.869
Cla010600 Citrullus lanatus Cla010600 I 0.869
Pm015649 Prunus mume Pm015649 I 0.869
29917.m001993 Ricinus communis 29917.m001993 I 0.869
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.869
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.869
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.869
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.869
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.869
PK26472.1 Cannabis sativa PK26472.1 I 0.869
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.869
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.869
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.859
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.859
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.859
Ca_24372 Cicer arietinum Ca_24372 I 0.859
Cla017388 Citrullus lanatus Cla017388 I 0.859
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.859
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.859
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.848
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.838
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.838
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.838
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.828
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.828
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.828
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.818
30147.m013890 Ricinus communis 30147.m013890 I 0.818
mgf003146m Mimulus guttatus mgf003146m I 0.818
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.818
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.808
LOB Arabidopsis thaliana AT5G63090 D 0.808
Bo3g104760 Brassica oleracea Bo3g104760 I 0.808
Bra038606 Brassica rapa Bra038606 I 0.808
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.808
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.808
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.808
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.808
OB01G14220 Oryza brachyantha OB01G14220 I 0.808
OBART01G04470 Oryza barthii OBART01G04470 I 0.808
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.808
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.808
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.808
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.808
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.808
OS01G0169400 Oryza sativa OS01G0169400 I 0.808
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.808
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.808
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.808
LOB Arabidopsis lyrata scaffold_802995.1 I 0.808
Si002632m.g Setaria italica Si002632m.g I 0.808
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.808
TCM_012190 Theobroma cacao TCM_012190 I 0.808
LOB Vitis vinifera VIT_17s0000g09010 I 0.808
Ca_07463 Cicer arietinum Ca_07463 I 0.808
Cla019510 Citrullus lanatus Cla019510 I 0.808
Pm024312 Prunus mume Pm024312 I 0.808
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.808
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.808
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.808
mgf024603m Mimulus guttatus mgf024603m I 0.808
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.808
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.808
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.808
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.808
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.808
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.808
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.808
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.808
MDP0000130659 Malus domestica MDP0000130659 I 0.808
MDP0000254288 Malus domestica MDP0000254288 I 0.808
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.808
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.808
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.808
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.808
Bo9g017470 Brassica oleracea Bo9g017470 I 0.798
F775_25656 Aegilops tauschii F775_25656 I 0.798
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.798
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.798
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.798
Ca_08824 Cicer arietinum Ca_08824 I 0.798
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.788
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.788
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.788
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.788
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.788
F775_33210 Aegilops tauschii F775_33210 I 0.781
Bra035860 Brassica rapa Bra035860 I 0.778
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.778
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.778
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.778
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.778
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.778
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.778
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.778
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.778
PK21510.1 Cannabis sativa PK21510.1 I 0.778
mgf016361m Mimulus guttatus mgf016361m I 0.768
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.759
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.758
Cla003499 Citrullus lanatus Cla003499 I 0.758
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.758
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.754
PK18922.1 Cannabis sativa PK18922.1 I 0.754
PK29334.1 Cannabis sativa PK29334.1 I 0.750
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.747
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.747
PK17019.1 Cannabis sativa PK17019.1 I 0.735
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.729
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.727
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.727
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.717
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.717
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.717
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.717
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.717
AS2 Vitis vinifera VIT_00s0340g00090 I 0.717
Ca_20200 Cicer arietinum Ca_20200 I 0.717
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.717
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.707
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.707
F775_21760 Aegilops tauschii F775_21760 I 0.707
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.707
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.707
OB05G24560 Oryza brachyantha OB05G24560 I 0.707
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.707
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.707
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.707
OS05G0417000 Oryza sativa OS05G0417000 I 0.707
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.707
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.707
Si024114m.g Setaria italica Si024114m.g I 0.707
Si036905m.g Setaria italica Si036905m.g I 0.707
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.707
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.707
Cla005851 Citrullus lanatus Cla005851 I 0.707
Pm026450 Prunus mume Pm026450 I 0.707
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.707
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.707
mgf014755m Mimulus guttatus mgf014755m I 0.707
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.707
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.707
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.707
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.707
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.707
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.707
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.707
MDP0000273432 Malus domestica MDP0000273432 I 0.707
MDP0000643326 Malus domestica MDP0000643326 I 0.707
GLYMA01G32340 Glycine max GLYMA01G32340 N 0.701