ORUFI05G17830 (Oryza rufipogon)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 ORUFI05G17830 T245768_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.889 0.889
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI05G17830.1 LOB 40 138

Links

Other LOB family TFs
Other Oryza rufipogon TFs

268 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA018046 Oryza indica BGIOSGA018046 I 1.000
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 1.000
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 1.000
OS05G0417000 Oryza sativa OS05G0417000 I 1.000
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.980
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.970
F775_21760 Aegilops tauschii F775_21760 I 0.970
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.970
OB05G24560 Oryza brachyantha OB05G24560 I 0.970
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.960
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.939
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.939
Si002599m.g Setaria italica Si002599m.g I 0.939
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.939
LBD6 Oryza indica BGIOSGA004955 I 0.929
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.929
F775_20715 Aegilops tauschii F775_20715 I 0.929
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.929
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.929
OBART01G39990 Oryza barthii OBART01G39990 I 0.929
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.929
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.929
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.929
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.929
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.929
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.929
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.929
LBD6 Oryza sativa OS01G0889400 I 0.929
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.929
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.929
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.929
Traes_1DL_B8551270A Triticum aestivum Traes_1DL_B8551270A I 0.926
OB01G48740 Oryza brachyantha OB01G48740 I 0.919
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.919
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.919
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.909
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.909
Si024114m.g Setaria italica Si024114m.g I 0.899
AS2 Vitis vinifera VIT_00s0340g00090 I 0.899
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.899
LBD6 Arabidopsis thaliana AT1G65620 D 0.889
Bo2g051420 Brassica oleracea Bo2g051420 I 0.889
Bra039733 Brassica rapa Bra039733 I 0.889
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.889
GRMZM2G133806 Zea mays GRMZM2G133806 I 0.889
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.889
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.889
TCM_024217 Theobroma cacao TCM_024217 I 0.889
29929.m004500 Ricinus communis 29929.m004500 I 0.889
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.889
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.889
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.889
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.889
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.889
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.889
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.889
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.889
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.879
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.879
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.879
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.879
MDP0000273432 Malus domestica MDP0000273432 I 0.879
PK18922.1 Cannabis sativa PK18922.1 I 0.877
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.869
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.869
mgf014755m Mimulus guttatus mgf014755m I 0.869
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.869
MDP0000643326 Malus domestica MDP0000643326 I 0.869
Cla005851 Citrullus lanatus Cla005851 I 0.859
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.859
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.859
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.848
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.848
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.848
Ca_20200 Cicer arietinum Ca_20200 I 0.848
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.848
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.848
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.838
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.818
LPERR05G13240 Leersia perrieri LPERR05G13240 I 0.808
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.778
TCM_000560 Theobroma cacao TCM_000560 I 0.778
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.778
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.778
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.778
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.778
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.778
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.778
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.778
ONIVA05G17300 Oryza nivara ONIVA05G17300 N 0.772
Bo7g064360 Brassica oleracea Bo7g064360 I 0.768
Bra012112 Brassica rapa Bra012112 I 0.768
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.768
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.768
GRMZM2G096064 Zea mays GRMZM2G096064 I 0.768
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.768
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.768
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.768
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.768
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.768
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.768
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.758
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.758
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.758
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.758
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.758
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.758
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.758
Ca_02124 Cicer arietinum Ca_02124 I 0.758
Cla020438 Citrullus lanatus Cla020438 I 0.758
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.758
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.758
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.758
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.758
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.758
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.758
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.758
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.758
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.758
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.758
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.758
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.747
LBD36 Arabidopsis thaliana AT5G66870 I 0.747
F775_25656 Aegilops tauschii F775_25656 I 0.747
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.747
OB01G14220 Oryza brachyantha OB01G14220 I 0.747
OBART01G04470 Oryza barthii OBART01G04470 I 0.747
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.747
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.747
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.747
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.747
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.747
OS01G0169400 Oryza sativa OS01G0169400 I 0.747
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.747
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.747
Si002632m.g Setaria italica Si002632m.g I 0.747
Pm026450 Prunus mume Pm026450 I 0.747
29676.m001633 Ricinus communis 29676.m001633 I 0.747
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.747
MDP0000562305 Malus domestica MDP0000562305 I 0.747
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.747
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.747
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.747
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.747
Bo2g167820 Brassica oleracea Bo2g167820 I 0.737
Bo9g017470 Brassica oleracea Bo9g017470 I 0.737
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.737
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.737
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.737
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.737
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.737
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.737
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.737
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.737
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.737
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.737
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.737
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.737
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.737
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.737
Si036905m.g Setaria italica Si036905m.g I 0.737
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.737
TCM_012190 Theobroma cacao TCM_012190 I 0.737
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.737
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.737
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.737
LOB Vitis vinifera VIT_17s0000g09010 I 0.737
Ca_02125 Cicer arietinum Ca_02125 I 0.737
Ca_08824 Cicer arietinum Ca_08824 I 0.737
Cla019510 Citrullus lanatus Cla019510 I 0.737
Pm024312 Prunus mume Pm024312 I 0.737
30147.m013890 Ricinus communis 30147.m013890 I 0.737
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.737
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.737
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.737
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.737
mgf004296m Mimulus guttatus mgf004296m I 0.737
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.737
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.737
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.737
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.737
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.737
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.737
MDP0000130659 Malus domestica MDP0000130659 I 0.737
MDP0000133546 Malus domestica MDP0000133546 I 0.737
MDP0000254288 Malus domestica MDP0000254288 I 0.737
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.737
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.737
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.737
LOB Arabidopsis thaliana AT5G63090 D 0.727
Bo3g104760 Brassica oleracea Bo3g104760 I 0.727
Bra038606 Brassica rapa Bra038606 I 0.727
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.727
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.727
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.727
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.727
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.727
Sb01g014650 Sorghum bicolor Sb01g014650 I 0.727
LOB Arabidopsis lyrata scaffold_802995.1 I 0.727
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.727
Ca_07463 Cicer arietinum Ca_07463 I 0.727
Ca_11161 Cicer arietinum Ca_11161 I 0.727
Pm010483 Prunus mume Pm010483 I 0.727
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.727
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.727
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.727
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.727
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.727
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.727
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.727
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.727
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.727
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.727
MDP0000310871 Malus domestica MDP0000310871 I 0.727
MDP0000848210 Malus domestica MDP0000848210 I 0.727
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.727
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.727
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.727
LBD10 Arabidopsis thaliana AT2G23660 I 0.717
Bo7g085860 Brassica oleracea Bo7g085860 I 0.717
Bra025294 Brassica rapa Bra025294 I 0.717
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.717
GRMZM2G362627 Zea mays GRMZM2G362627 I 0.717
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.717
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.717
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.717
LBD10 Arabidopsis lyrata scaffold_400352.1 I 0.717
TCM_016952 Theobroma cacao TCM_016952 I 0.717
Ca_24372 Cicer arietinum Ca_24372 I 0.717
Cla017388 Citrullus lanatus Cla017388 I 0.717
Pm015649 Prunus mume Pm015649 I 0.717
29917.m001993 Ricinus communis 29917.m001993 I 0.717
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.717
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.717
mgf003146m Mimulus guttatus mgf003146m I 0.717
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.717
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.717
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.717
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.717
MDP0000777060 Malus domestica MDP0000777060 I 0.717
SapurV1A.0811s0010 Salix purpurea SapurV1A.0811s0010 I 0.717
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.717
PK26472.1 Cannabis sativa PK26472.1 I 0.717
LBD25 Arabidopsis thaliana AT3G27650 I 0.707
BGIOSGA013119 Oryza indica BGIOSGA013119 I 0.707
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.707
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.707
GLYMA05G09950 Glycine max GLYMA05G09950 I 0.707
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.707
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.707
GRMZM2G154320 Zea mays GRMZM2G154320 N 0.707
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I 0.707
ONIVA11G15310 Oryza nivara ONIVA11G15310 I 0.707
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I 0.707
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I 0.707
OS03G0612400 Oryza sativa OS03G0612400 I 0.707
Traes_4BS_C1F4F41E9 Triticum aestivum Traes_4BS_C1F4F41E9 I 0.707
Traes_4DS_72ABC3EE5 Triticum aestivum Traes_4DS_72ABC3EE5 I 0.707
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.707
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.707
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.707
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.707
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.707
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.707
MDP0000197526 Malus domestica MDP0000197526 I 0.707
Thhalv10000525m.g Eutrema salsugineum Thhalv10000525m.g I 0.707
PK21510.1 Cannabis sativa PK21510.1 I 0.707
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.707