Eucgr.I01750 (Eucalyptus grandis)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Eucgr.I01750 T246855_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.889 0.889
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.I01750.1 LOB 10 108

Links

Other LOB family TFs
Other Eucalyptus grandis TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29917.m001993 Ricinus communis 29917.m001993 I 0.990
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.990
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.980
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.980
Pm015649 Prunus mume Pm015649 I 0.980
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.980
PK26472.1 Cannabis sativa PK26472.1 I 0.980
Cla017388 Citrullus lanatus Cla017388 I 0.970
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.970
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.970
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.960
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.960
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.960
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.960
MDP0000848210 Malus domestica MDP0000848210 I 0.960
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.949
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.949
TCM_016952 Theobroma cacao TCM_016952 I 0.949
Ca_24372 Cicer arietinum Ca_24372 I 0.949
Cla010600 Citrullus lanatus Cla010600 I 0.949
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.939
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.939
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.939
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.939
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.929
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.929
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.929
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.929
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.929
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.919
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.919
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.919
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.909
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.909
OB01G14220 Oryza brachyantha OB01G14220 I 0.909
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.909
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.909
Si002632m.g Setaria italica Si002632m.g I 0.909
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.909
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.909
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.909
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.909
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.899
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.899
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.899
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.899
OBART01G04470 Oryza barthii OBART01G04470 I 0.899
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.899
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.899
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.899
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.899
OS01G0169400 Oryza sativa OS01G0169400 I 0.899
TCM_012190 Theobroma cacao TCM_012190 I 0.899
LOB Vitis vinifera VIT_17s0000g09010 I 0.899
Cla019510 Citrullus lanatus Cla019510 I 0.899
30147.m013890 Ricinus communis 30147.m013890 I 0.899
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.899
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.899
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.899
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.899
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.899
MDP0000130659 Malus domestica MDP0000130659 I 0.899
MDP0000254288 Malus domestica MDP0000254288 I 0.899
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.899
LOB Arabidopsis thaliana AT5G63090 D 0.889
Bo3g104760 Brassica oleracea Bo3g104760 I 0.889
Bra038606 Brassica rapa Bra038606 I 0.889
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.889
F775_25656 Aegilops tauschii F775_25656 I 0.889
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.889
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.889
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.889
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.889
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.889
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.889
LOB Arabidopsis lyrata scaffold_802995.1 I 0.889
Ca_08824 Cicer arietinum Ca_08824 I 0.889
Pm024312 Prunus mume Pm024312 I 0.889
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.889
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.889
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.889
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.889
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.889
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.889
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.889
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.889
LBD25 Arabidopsis thaliana AT3G27650 I 0.879
Bo9g017470 Brassica oleracea Bo9g017470 I 0.879
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.879
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.879
mgf024603m Mimulus guttatus mgf024603m I 0.879
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.879
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.879
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.879
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.879
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.879
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.869
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.869
Ca_07463 Cicer arietinum Ca_07463 I 0.869
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.869
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.869
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.869
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.869
PK18922.1 Cannabis sativa PK18922.1 I 0.860
Bo7g085860 Brassica oleracea Bo7g085860 I 0.859
Bo9g008330 Brassica oleracea Bo9g008330 I 0.859
Bra025294 Brassica rapa Bra025294 I 0.859
Bra035860 Brassica rapa Bra035860 I 0.859
Bra039072 Brassica rapa Bra039072 I 0.859
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.859
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.859
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.859
PK21510.1 Cannabis sativa PK21510.1 I 0.859
Cla003499 Citrullus lanatus Cla003499 I 0.848
mgf003146m Mimulus guttatus mgf003146m I 0.848
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.838
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.838
mgf016361m Mimulus guttatus mgf016361m I 0.838
Bo2g144870 Brassica oleracea Bo2g144870 I 0.828
Bra033019 Brassica rapa Bra033019 I 0.828
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.808
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.808
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.788
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.788
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.778
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.768
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.768
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.758
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.758
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.758
AS2 Vitis vinifera VIT_00s0340g00090 I 0.758
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.756
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.747
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.747
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.747
Cla005851 Citrullus lanatus Cla005851 I 0.747
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.747
mgf014755m Mimulus guttatus mgf014755m I 0.747
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.747
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.747
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.747
MDP0000273432 Malus domestica MDP0000273432 I 0.747
LBD6 Arabidopsis thaliana AT1G65620 D 0.737
Bo2g051420 Brassica oleracea Bo2g051420 I 0.737
Bra039733 Brassica rapa Bra039733 I 0.737
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.737
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.737
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.737
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.737
TCM_024217 Theobroma cacao TCM_024217 I 0.737
Ca_20200 Cicer arietinum Ca_20200 I 0.737
29929.m004500 Ricinus communis 29929.m004500 I 0.737
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.737
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.737
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.737
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.737
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.737
MDP0000643326 Malus domestica MDP0000643326 I 0.737
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.737
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.727
F775_21760 Aegilops tauschii F775_21760 I 0.727
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.727
OB05G24560 Oryza brachyantha OB05G24560 I 0.727
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.727
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.727
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.727
OS05G0417000 Oryza sativa OS05G0417000 I 0.727
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.727
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.727
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.727
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.727
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.727
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.727
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.727
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.727
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.727
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.727
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.717
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.717
TCM_000560 Theobroma cacao TCM_000560 I 0.717
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.717
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.717
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.717
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.717
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.717
LBD6 Oryza indica BGIOSGA004955 I 0.707
Bo2g167820 Brassica oleracea Bo2g167820 I 0.707
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.707
F775_20715 Aegilops tauschii F775_20715 I 0.707
GLYMA01G32340 Glycine max GLYMA01G32340 N 0.707
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.707
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.707
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.707
OB01G48740 Oryza brachyantha OB01G48740 I 0.707
OBART01G39990 Oryza barthii OBART01G39990 I 0.707
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.707
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.707
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.707
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.707
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.707
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.707
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.707
LBD6 Oryza sativa OS01G0889400 I 0.707
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.707
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.707
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.707
Si002599m.g Setaria italica Si002599m.g I 0.707
Si024114m.g Setaria italica Si024114m.g I 0.707
Si036905m.g Setaria italica Si036905m.g I 0.707
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.707
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.707
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.707
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.707
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.707
Ca_11161 Cicer arietinum Ca_11161 I 0.707
Pm026450 Prunus mume Pm026450 I 0.707
29676.m001633 Ricinus communis 29676.m001633 I 0.707
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.707
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.707
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.707
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.707
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.707
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.707
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.707
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.707
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.707
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.707