Gorai.012G063800 (Gossypium raimondii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Gorai.012G063800 T247001_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.869 0.869
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.012G063800.1 LOB 10 108
Gorai.012G063800.2 LOB 10 108

Links

Other LOB family TFs
Other Gossypium raimondii TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_016952 Theobroma cacao TCM_016952 I 0.960
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.949
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.949
Pm015649 Prunus mume Pm015649 I 0.949
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.949
PK26472.1 Cannabis sativa PK26472.1 I 0.949
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.939
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.939
29917.m001993 Ricinus communis 29917.m001993 I 0.939
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.939
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.939
MDP0000848210 Malus domestica MDP0000848210 I 0.939
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.939
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.929
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.929
Ca_24372 Cicer arietinum Ca_24372 I 0.929
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.929
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.929
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.920
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.919
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.919
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.919
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.919
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.919
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.909
Cla010600 Citrullus lanatus Cla010600 I 0.909
Cla017388 Citrullus lanatus Cla017388 I 0.909
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.909
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.909
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.909
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.889
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.889
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.889
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.889
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.879
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.879
TCM_012190 Theobroma cacao TCM_012190 I 0.879
LOB Vitis vinifera VIT_17s0000g09010 I 0.879
Cla019510 Citrullus lanatus Cla019510 I 0.879
30147.m013890 Ricinus communis 30147.m013890 I 0.879
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.879
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.879
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.879
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.879
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.879
MDP0000130659 Malus domestica MDP0000130659 I 0.879
MDP0000254288 Malus domestica MDP0000254288 I 0.879
PK21510.1 Cannabis sativa PK21510.1 I 0.879
LOB Arabidopsis thaliana AT5G63090 D 0.869
Bo3g104760 Brassica oleracea Bo3g104760 I 0.869
Bra038606 Brassica rapa Bra038606 I 0.869
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.869
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.869
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.869
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.869
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.869
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.869
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.869
LOB Arabidopsis lyrata scaffold_802995.1 I 0.869
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.869
Ca_08824 Cicer arietinum Ca_08824 I 0.869
Pm024312 Prunus mume Pm024312 I 0.869
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.869
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.869
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.869
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.869
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.869
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.869
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.869
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.869
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.869
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.869
Bo9g017470 Brassica oleracea Bo9g017470 I 0.859
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.859
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.859
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.859
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.859
mgf003146m Mimulus guttatus mgf003146m I 0.859
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.859
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.859
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.859
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.848
F775_25656 Aegilops tauschii F775_25656 I 0.848
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.848
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.848
OB01G14220 Oryza brachyantha OB01G14220 I 0.848
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.848
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.848
Si002632m.g Setaria italica Si002632m.g I 0.848
Ca_07463 Cicer arietinum Ca_07463 I 0.848
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.848
mgf024603m Mimulus guttatus mgf024603m I 0.848
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.848
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.848
LBD25 Arabidopsis thaliana AT3G27650 I 0.838
Bra035860 Brassica rapa Bra035860 I 0.838
OBART01G04470 Oryza barthii OBART01G04470 I 0.838
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.838
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.838
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.838
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.838
OS01G0169400 Oryza sativa OS01G0169400 I 0.838
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.838
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.838
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.828
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.828
mgf016361m Mimulus guttatus mgf016361m I 0.828
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.828
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.828
Bo7g085860 Brassica oleracea Bo7g085860 I 0.818
Bo9g008330 Brassica oleracea Bo9g008330 I 0.818
Bra025294 Brassica rapa Bra025294 I 0.818
Bra039072 Brassica rapa Bra039072 I 0.818
Cla003499 Citrullus lanatus Cla003499 I 0.808
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.808
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.798
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.798
Bo2g144870 Brassica oleracea Bo2g144870 I 0.788
Bra033019 Brassica rapa Bra033019 I 0.788
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.780
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.778
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.778
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.778
PK18922.1 Cannabis sativa PK18922.1 I 0.772
F775_33210 Aegilops tauschii F775_33210 I 0.767
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.760
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.758
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.758
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.747
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.741
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.738
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.737
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.737
PK29334.1 Cannabis sativa PK29334.1 I 0.734
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.727
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.727
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.727
Ca_20200 Cicer arietinum Ca_20200 I 0.727
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.717
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.717
AS2 Vitis vinifera VIT_00s0340g00090 I 0.717
PK21617.1 Cannabis sativa PK21617.1 I 0.717
GLYMA01G32340 Glycine max GLYMA01G32340 N 0.711
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.707
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.707
Cla005851 Citrullus lanatus Cla005851 I 0.707
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.707
mgf014755m Mimulus guttatus mgf014755m I 0.707
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.707
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.707
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.707
MDP0000273432 Malus domestica MDP0000273432 I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.706
gw1.7.209.1 Physcomitrella patens gw1.7.209.1 I 0.701