Solyc03g112430.1 (Solanum lycopersicum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Solyc03g112430.1 T246083_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.919 0.919
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc03g112430.1.1 LOB 10 108

Links

Other LOB family TFs
Other Solanum lycopersicum TFs

249 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.980
LOB Vitis vinifera VIT_17s0000g09010 I 0.949
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.949
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.939
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.939
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.939
TCM_012190 Theobroma cacao TCM_012190 I 0.939
Cla019510 Citrullus lanatus Cla019510 I 0.939
30147.m013890 Ricinus communis 30147.m013890 I 0.939
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.939
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.939
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.939
MDP0000130659 Malus domestica MDP0000130659 I 0.939
MDP0000254288 Malus domestica MDP0000254288 I 0.939
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.929
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.929
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.929
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.929
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.929
Ca_08824 Cicer arietinum Ca_08824 I 0.929
Pm024312 Prunus mume Pm024312 I 0.929
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.929
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.929
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.929
LOB Arabidopsis thaliana AT5G63090 D 0.919
Bo3g104760 Brassica oleracea Bo3g104760 I 0.919
Bra038606 Brassica rapa Bra038606 I 0.919
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.919
LOB Arabidopsis lyrata scaffold_802995.1 I 0.919
Ca_07463 Cicer arietinum Ca_07463 I 0.919
mgf024603m Mimulus guttatus mgf024603m I 0.919
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.919
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.919
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.919
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.919
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.919
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.919
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.919
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.919
Bo9g017470 Brassica oleracea Bo9g017470 I 0.909
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.909
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.909
PK21510.1 Cannabis sativa PK21510.1 I 0.909
Bra035860 Brassica rapa Bra035860 I 0.899
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.899
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.889
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.889
OB01G14220 Oryza brachyantha OB01G14220 I 0.889
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.889
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.889
Si002632m.g Setaria italica Si002632m.g I 0.889
mgf016361m Mimulus guttatus mgf016361m I 0.889
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.889
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.889
F775_25656 Aegilops tauschii F775_25656 I 0.879
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.879
OBART01G04470 Oryza barthii OBART01G04470 I 0.879
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.879
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.879
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.879
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.879
OS01G0169400 Oryza sativa OS01G0169400 I 0.879
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.879
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.879
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.879
Ca_24372 Cicer arietinum Ca_24372 I 0.879
29917.m001993 Ricinus communis 29917.m001993 I 0.879
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.879
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.879
AMTR_s00083p00067130 Amborella trichopoda AMTR_s00083p00067130 I 0.871
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.869
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.869
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.869
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.869
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.869
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.869
Pm015649 Prunus mume Pm015649 I 0.869
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.869
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.869
MDP0000848210 Malus domestica MDP0000848210 I 0.869
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.869
PK26472.1 Cannabis sativa PK26472.1 I 0.869
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.859
TCM_016952 Theobroma cacao TCM_016952 I 0.859
Cla010600 Citrullus lanatus Cla010600 I 0.859
Cla017388 Citrullus lanatus Cla017388 I 0.859
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.859
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.859
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.859
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.859
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.859
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.859
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.848
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.848
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.848
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.848
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.848
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.838
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.838
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.838
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.838
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.838
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.838
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.836
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.833
Cla003499 Citrullus lanatus Cla003499 I 0.828
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.828
PK18922.1 Cannabis sativa PK18922.1 I 0.825
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.812
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.808
mgf003146m Mimulus guttatus mgf003146m I 0.808
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.798
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.798
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.798
F775_33210 Aegilops tauschii F775_33210 I 0.781
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.780
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.778
LBD25 Arabidopsis thaliana AT3G27650 I 0.778
Bo7g085860 Brassica oleracea Bo7g085860 I 0.778
Bra025294 Brassica rapa Bra025294 I 0.778
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.778
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.778
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.778
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.778
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.778
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.769
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.768
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.768
PK17019.1 Cannabis sativa PK17019.1 I 0.765
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.760
LBD6 Arabidopsis thaliana AT1G65620 D 0.758
Bo2g051420 Brassica oleracea Bo2g051420 I 0.758
Bo9g008330 Brassica oleracea Bo9g008330 I 0.758
Bra039072 Brassica rapa Bra039072 I 0.758
Bra039733 Brassica rapa Bra039733 I 0.758
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.758
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.758
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.758
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.758
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.758
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.758
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.758
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.758
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.758
TCM_024217 Theobroma cacao TCM_024217 I 0.758
AS2 Vitis vinifera VIT_00s0340g00090 I 0.758
Ca_20200 Cicer arietinum Ca_20200 I 0.758
Cla005851 Citrullus lanatus Cla005851 I 0.758
29929.m004500 Ricinus communis 29929.m004500 I 0.758
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.758
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.758
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.758
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.758
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.758
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.758
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.758
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.758
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.758
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.758
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.758
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.758
MDP0000273432 Malus domestica MDP0000273432 I 0.758
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.758
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.758
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.758
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.747
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.747
mgf014755m Mimulus guttatus mgf014755m I 0.747
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.747
MDP0000643326 Malus domestica MDP0000643326 I 0.747
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.747
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.737
Bo2g144870 Brassica oleracea Bo2g144870 I 0.737
Bra033019 Brassica rapa Bra033019 I 0.737
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.737
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.737
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.737
OS05G0417000 Oryza sativa OS05G0417000 I 0.737
PK13228.1 Cannabis sativa PK13228.1 I 0.734
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I 0.733
LBD6 Oryza indica BGIOSGA004955 I 0.727
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.727
F775_20715 Aegilops tauschii F775_20715 I 0.727
F775_21760 Aegilops tauschii F775_21760 I 0.727
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.727
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.727
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.727
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.727
OB01G48740 Oryza brachyantha OB01G48740 I 0.727
OB05G24560 Oryza brachyantha OB05G24560 I 0.727
OBART01G39990 Oryza barthii OBART01G39990 I 0.727
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.727
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.727
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.727
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.727
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.727
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.727
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.727
LBD6 Oryza sativa OS01G0889400 I 0.727
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.727
Si002599m.g Setaria italica Si002599m.g I 0.727
Si024114m.g Setaria italica Si024114m.g I 0.727
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.727
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.727
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.727
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.727
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.727
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.727
Lus10001139.g Linum usitatissimum Lus10001139.g I 0.724
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.722
Bo2g167820 Brassica oleracea Bo2g167820 I 0.717
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.717
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.717
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.717
TCM_000560 Theobroma cacao TCM_000560 I 0.717
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.717
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.717
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.717
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.717
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.717
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.717
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.717
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.717
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.717
PK21617.1 Cannabis sativa PK21617.1 I 0.717
Bo7g064360 Brassica oleracea Bo7g064360 I 0.707
Bra012112 Brassica rapa Bra012112 I 0.707
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.707
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.707
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.707
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
Si037583m.g Setaria italica Si037583m.g I 0.707
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.707
Pm026450 Prunus mume Pm026450 I 0.707
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.707
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.707
mgf004296m Mimulus guttatus mgf004296m I 0.707
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.707
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.707
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.707
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.707
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.707
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.707
PK29334.1 Cannabis sativa PK29334.1 I 0.703
OS03G0659700 Oryza sativa OS03G0659700 I 0.702
gw1.7.209.1 Physcomitrella patens gw1.7.209.1 I 0.701
GSMUA_Achr10G20760_001 Musa acuminata GSMUA_Achr10G20760_001 I 0.700