Pavir.J03307 (Panicum virgatum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pavir.J03307 T247222_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.838 0.838
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J03307.1.p LOB 33 131

Links

Other LOB family TFs
Other Panicum virgatum TFs

241 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.990
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.980
Si024114m.g Setaria italica Si024114m.g I 0.980
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.939
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.939
Si002599m.g Setaria italica Si002599m.g I 0.939
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.939
F775_20715 Aegilops tauschii F775_20715 I 0.929
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.929
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.929
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.929
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.929
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.919
F775_21760 Aegilops tauschii F775_21760 I 0.919
OB01G48740 Oryza brachyantha OB01G48740 I 0.919
OB05G24560 Oryza brachyantha OB05G24560 I 0.919
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.919
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.919
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.919
OS05G0417000 Oryza sativa OS05G0417000 I 0.919
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.919
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.919
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.919
LBD6 Oryza indica BGIOSGA004955 I 0.909
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.909
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.909
OBART01G39990 Oryza barthii OBART01G39990 I 0.909
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.909
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.909
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.909
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.909
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.909
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.909
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.909
LBD6 Oryza sativa OS01G0889400 I 0.909
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.899
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.889
GRMZM2G133806 Zea mays GRMZM2G133806 I 0.889
PK18922.1 Cannabis sativa PK18922.1 I 0.860
GSMUA_Achr11G26500_001 Musa acuminata GSMUA_Achr11G26500_001 I 0.848
GSMUA_Achr5G25770_001 Musa acuminata GSMUA_Achr5G25770_001 I 0.848
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.848
LBD6 Arabidopsis thaliana AT1G65620 D 0.838
Bo2g051420 Brassica oleracea Bo2g051420 I 0.838
Bra039733 Brassica rapa Bra039733 I 0.838
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.838
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.838
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.838
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.838
TCM_024217 Theobroma cacao TCM_024217 I 0.838
AS2 Vitis vinifera VIT_00s0340g00090 I 0.838
29929.m004500 Ricinus communis 29929.m004500 I 0.838
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.838
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.838
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.838
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.838
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.838
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.838
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.838
MDP0000273432 Malus domestica MDP0000273432 I 0.838
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.838
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.838
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.838
GRMZM2G096064 Zea mays GRMZM2G096064 I 0.828
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.828
mgf014755m Mimulus guttatus mgf014755m I 0.828
MDP0000643326 Malus domestica MDP0000643326 I 0.828
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.818
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.818
Cla005851 Citrullus lanatus Cla005851 I 0.818
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.818
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.818
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.818
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.818
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.808
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.808
LPERR05G13240 Leersia perrieri LPERR05G13240 I 0.808
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.808
Ca_20200 Cicer arietinum Ca_20200 I 0.808
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.808
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.788
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.788
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.778
TCM_000560 Theobroma cacao TCM_000560 I 0.778
Traes_1DL_B8551270A Triticum aestivum Traes_1DL_B8551270A I 0.778
Pm026450 Prunus mume Pm026450 I 0.778
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.778
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.768
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.768
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.768
mgf004296m Mimulus guttatus mgf004296m I 0.768
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.768
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.768
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.768
MDP0000562305 Malus domestica MDP0000562305 I 0.768
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.768
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.768
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.768
LBD36 Arabidopsis thaliana AT5G66870 I 0.758
Bo7g064360 Brassica oleracea Bo7g064360 I 0.758
Bra012112 Brassica rapa Bra012112 I 0.758
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.758
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.758
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.758
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.758
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.758
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.758
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.758
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.758
MDP0000310871 Malus domestica MDP0000310871 I 0.758
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.758
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.747
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.747
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.747
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.747
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.747
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.747
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.747
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.747
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.747
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.747
Ca_02124 Cicer arietinum Ca_02124 I 0.747
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.747
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.747
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.747
MDP0000777060 Malus domestica MDP0000777060 I 0.747
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.747
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.737
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.737
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.737
Sb01g014650 Sorghum bicolor Sb01g014650 I 0.737
Si036905m.g Setaria italica Si036905m.g I 0.737
Ca_02125 Cicer arietinum Ca_02125 I 0.737
Pm010483 Prunus mume Pm010483 I 0.737
29676.m001633 Ricinus communis 29676.m001633 I 0.737
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.737
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.737
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.737
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.737
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.737
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.737
Bo2g167820 Brassica oleracea Bo2g167820 I 0.727
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.727
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.727
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.727
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.727
Ca_07463 Cicer arietinum Ca_07463 I 0.727
Cla020438 Citrullus lanatus Cla020438 I 0.727
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.727
MDP0000133546 Malus domestica MDP0000133546 I 0.727
MDP0000197526 Malus domestica MDP0000197526 I 0.727
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.727
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.717
LBD10 Arabidopsis thaliana AT2G23660 I 0.717
BGIOSGA013119 Oryza indica BGIOSGA013119 I 0.717
F775_25656 Aegilops tauschii F775_25656 I 0.717
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.717
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.717
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.717
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.717
GRMZM2G121487 Zea mays GRMZM2G121487 N 0.717
GRMZM2G362627 Zea mays GRMZM2G362627 I 0.717
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.717
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.717
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.717
OB01G14220 Oryza brachyantha OB01G14220 I 0.717
OBART01G04470 Oryza barthii OBART01G04470 I 0.717
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.717
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I 0.717
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.717
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.717
ONIVA05G17300 Oryza nivara ONIVA05G17300 N 0.717
ONIVA11G15310 Oryza nivara ONIVA11G15310 I 0.717
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.717
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I 0.717
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.717
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I 0.717
OS01G0169400 Oryza sativa OS01G0169400 I 0.717
OS03G0612400 Oryza sativa OS03G0612400 I 0.717
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.717
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.717
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.717
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.717
LBD10 Arabidopsis lyrata scaffold_400352.1 I 0.717
Si002632m.g Setaria italica Si002632m.g I 0.717
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.717
TCM_012190 Theobroma cacao TCM_012190 I 0.717
LOB Vitis vinifera VIT_17s0000g09010 I 0.717
Ca_08824 Cicer arietinum Ca_08824 I 0.717
Ca_11161 Cicer arietinum Ca_11161 I 0.717
Cla019510 Citrullus lanatus Cla019510 I 0.717
Pm024312 Prunus mume Pm024312 I 0.717
30147.m013890 Ricinus communis 30147.m013890 I 0.717
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.717
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.717
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.717
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.717
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.717
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.717
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.717
MDP0000130659 Malus domestica MDP0000130659 I 0.717
MDP0000254288 Malus domestica MDP0000254288 I 0.717
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.717
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.717
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.717
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.717
LOB Arabidopsis thaliana AT5G63090 D 0.707
Bo3g104760 Brassica oleracea Bo3g104760 I 0.707
Bo7g085860 Brassica oleracea Bo7g085860 I 0.707
Bra025294 Brassica rapa Bra025294 I 0.707
Bra038606 Brassica rapa Bra038606 I 0.707
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.707
GLYMA05G09950 Glycine max GLYMA05G09950 I 0.707
GRMZM2G154320 Zea mays GRMZM2G154320 N 0.707
OB03G34080 Oryza brachyantha OB03G34080 I 0.707
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.707
LOB Arabidopsis lyrata scaffold_802995.1 I 0.707
Traes_4BS_C1F4F41E9 Triticum aestivum Traes_4BS_C1F4F41E9 I 0.707
Traes_4DS_72ABC3EE5 Triticum aestivum Traes_4DS_72ABC3EE5 I 0.707
Cla017388 Citrullus lanatus Cla017388 I 0.707
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.707
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.707
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.707
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.707
Bostr.27895s0126 Boechera stricta Bostr.27895s0126 N 0.707
Cagra.2475s0001 Capsella grandiflora Cagra.2475s0001 I 0.707
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.707
Carubv10025704m.g Capsella rubella Carubv10025704m.g I 0.707
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.707
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.707
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.707
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.707
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.707
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.707
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.707
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.707
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.707
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.707
Thhalv10000525m.g Eutrema salsugineum Thhalv10000525m.g I 0.707
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.707
PK29334.1 Cannabis sativa PK29334.1 I 0.703