PGSC0003DMG401000764 (Solanum tuberosum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 PGSC0003DMG401000764 T245848_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.788 0.788
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400002011 LOB 7 106

Links

Other LOB family TFs
Other Solanum tuberosum TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.980
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.980
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.919
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.909
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.899
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.899
Pm026450 Prunus mume Pm026450 I 0.899
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.899
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.899
TCM_000560 Theobroma cacao TCM_000560 I 0.889
Cla020438 Citrullus lanatus Cla020438 I 0.889
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.889
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.879
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.879
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.879
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.879
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.869
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.869
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.869
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.869
LBD36 Arabidopsis thaliana AT5G66870 I 0.859
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.859
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.859
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.859
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.859
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.859
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.859
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.859
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.848
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.848
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.848
PK18922.1 Cannabis sativa PK18922.1 I 0.842
Bo2g167820 Brassica oleracea Bo2g167820 I 0.838
Bo7g064360 Brassica oleracea Bo7g064360 I 0.838
Bra012112 Brassica rapa Bra012112 I 0.838
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.838
29676.m001633 Ricinus communis 29676.m001633 I 0.838
mgf004296m Mimulus guttatus mgf004296m I 0.838
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.838
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.838
MDP0000310871 Malus domestica MDP0000310871 I 0.838
MDP0000777060 Malus domestica MDP0000777060 I 0.838
F775_33210 Aegilops tauschii F775_33210 I 0.836
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.833
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.828
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.828
Pm010483 Prunus mume Pm010483 I 0.828
MDP0000562305 Malus domestica MDP0000562305 I 0.828
PK13228.1 Cannabis sativa PK13228.1 I 0.828
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.818
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.818
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.818
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.818
VIT_07s0197g00030 Vitis vinifera VIT_07s0197g00030 I 0.818
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.818
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.818
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.818
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.818
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.818
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.818
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.808
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.798
Ca_11161 Cicer arietinum Ca_11161 I 0.798
MDP0000197526 Malus domestica MDP0000197526 I 0.798
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.788
LBD6 Arabidopsis thaliana AT1G65620 D 0.788
Bo2g051420 Brassica oleracea Bo2g051420 I 0.788
Bra039733 Brassica rapa Bra039733 I 0.788
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.788
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.788
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.788
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.788
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.788
TCM_024217 Theobroma cacao TCM_024217 I 0.788
AS2 Vitis vinifera VIT_00s0340g00090 I 0.788
Ca_02125 Cicer arietinum Ca_02125 I 0.788
29929.m004500 Ricinus communis 29929.m004500 I 0.788
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.788
mgf014755m Mimulus guttatus mgf014755m I 0.788
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.788
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.788
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.788
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.788
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.788
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.788
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.788
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.788
MDP0000273432 Malus domestica MDP0000273432 I 0.788
MDP0000643326 Malus domestica MDP0000643326 I 0.788
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.788
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.788
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.788
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.788
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.778
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.778
Traes_4BS_C1F4F41E9 Triticum aestivum Traes_4BS_C1F4F41E9 I 0.778
Traes_4DS_72ABC3EE5 Triticum aestivum Traes_4DS_72ABC3EE5 I 0.778
Ca_02124 Cicer arietinum Ca_02124 I 0.778
Cla005851 Citrullus lanatus Cla005851 I 0.778
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.778
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.778
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.769
BGIOSGA013119 Oryza indica BGIOSGA013119 I 0.768
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.768
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I 0.768
ONIVA11G15310 Oryza nivara ONIVA11G15310 I 0.768
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I 0.768
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I 0.768
OS03G0612400 Oryza sativa OS03G0612400 I 0.768
Traes_4AL_C060BF9F6 Triticum aestivum Traes_4AL_C060BF9F6 I 0.768
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.768
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.758
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.758
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.758
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.758
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.758
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.758
Si002599m.g Setaria italica Si002599m.g I 0.758
Ca_20200 Cicer arietinum Ca_20200 I 0.758
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.758
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.758
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.758
SapurV1A.0811s0010 Salix purpurea SapurV1A.0811s0010 I 0.758
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I 0.750
TRIUR3_06488 Triticum urartu TRIUR3_06488 I 0.750
F775_21760 Aegilops tauschii F775_21760 I 0.747
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.747
OB03G34080 Oryza brachyantha OB03G34080 I 0.747
Si036905m.g Setaria italica Si036905m.g I 0.747
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.747
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.747
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.747
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.745
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.738
LBD6 Oryza indica BGIOSGA004955 I 0.737
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.737
BRADI1G14677 Brachypodium distachyon BRADI1G14677 N 0.737
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.737
F775_20715 Aegilops tauschii F775_20715 I 0.737
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.737
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.737
OB01G48740 Oryza brachyantha OB01G48740 I 0.737
OB05G24560 Oryza brachyantha OB05G24560 I 0.737
OBART01G39990 Oryza barthii OBART01G39990 I 0.737
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.737
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.737
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.737
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.737
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.737
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.737
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.737
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.737
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.737
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.737
LBD6 Oryza sativa OS01G0889400 I 0.737
OS05G0417000 Oryza sativa OS05G0417000 I 0.737
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.737
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.737
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.737
Bo4g151770 Brassica oleracea Bo4g151770 I 0.727
Bra032153 Brassica rapa Bra032153 I 0.727
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.727
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.727
GRMZM2G133806 Zea mays GRMZM2G133806 I 0.727
Sb01g014650 Sorghum bicolor Sb01g014650 I 0.727
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.727
Si024114m.g Setaria italica Si024114m.g I 0.727
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.727
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.727
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.727
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.727
LBD10 Arabidopsis thaliana AT2G23660 I 0.717
GLYMA05G09950 Glycine max GLYMA05G09950 I 0.717
GRMZM2G154320 Zea mays GRMZM2G154320 N 0.717
GRMZM2G362627 Zea mays GRMZM2G362627 I 0.717
MTR_3g452660 Medicago truncatula MTR_3g452660 N 0.717
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.717
Cagra.2475s0001 Capsella grandiflora Cagra.2475s0001 I 0.717
Carubv10025704m.g Capsella rubella Carubv10025704m.g I 0.717
Thhalv10000525m.g Eutrema salsugineum Thhalv10000525m.g I 0.717
PK02680.1 Cannabis sativa PK02680.1 N 0.714
PK05388.1 Cannabis sativa PK05388.1 I 0.714
GSMUA_Achr2G13400_001 Musa acuminata GSMUA_Achr2G13400_001 I 0.710
LBD10 Arabidopsis lyrata scaffold_400352.1 I 0.707
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.707
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.707
Pm010477 Prunus mume Pm010477 N 0.701