MDP0000310871 (Malus domestica)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 MDP0000310871 T247119_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000310871 LOB 244 342

Links

Other LOB family TFs
Other Malus domestica TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000562305 Malus domestica MDP0000562305 I 0.929
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.909
Pm026450 Prunus mume Pm026450 I 0.909
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.899
TCM_000560 Theobroma cacao TCM_000560 I 0.889
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.879
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.869
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.869
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.869
Bo7g064360 Brassica oleracea Bo7g064360 I 0.859
Bra012112 Brassica rapa Bra012112 I 0.859
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.859
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.859
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.859
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.859
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.859
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.859
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.859
LBD36 Arabidopsis thaliana AT5G66870 I 0.848
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.848
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.848
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.848
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.848
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.848
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.848
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.848
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.848
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.848
Bo2g167820 Brassica oleracea Bo2g167820 I 0.838
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.838
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.838
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.838
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.838
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.838
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.838
mgf004296m Mimulus guttatus mgf004296m I 0.838
MDP0000777060 Malus domestica MDP0000777060 I 0.838
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.838
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.828
29676.m001633 Ricinus communis 29676.m001633 I 0.828
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.828
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.828
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.828
F775_33210 Aegilops tauschii F775_33210 I 0.822
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.818
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.818
Cla020438 Citrullus lanatus Cla020438 I 0.818
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.818
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.818
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.818
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.808
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.808
Ca_11161 Cicer arietinum Ca_11161 I 0.808
Pm010483 Prunus mume Pm010483 I 0.808
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.808
PK18922.1 Cannabis sativa PK18922.1 I 0.807
VIT_07s0197g00030 Vitis vinifera VIT_07s0197g00030 I 0.798
MDP0000197526 Malus domestica MDP0000197526 I 0.798
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.796
Ca_02125 Cicer arietinum Ca_02125 I 0.788
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.788
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.788
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.778
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.778
Ca_02124 Cicer arietinum Ca_02124 I 0.778
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.769
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.768
GLYMA05G09950 Glycine max GLYMA05G09950 I 0.768
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.768
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.768
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.768
Cagra.2475s0001 Capsella grandiflora Cagra.2475s0001 I 0.768
Carubv10025704m.g Capsella rubella Carubv10025704m.g I 0.768
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.768
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.768
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.768
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.768
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.768
LBD6 Arabidopsis thaliana AT1G65620 D 0.758
LBD10 Arabidopsis thaliana AT2G23660 I 0.758
Bo2g051420 Brassica oleracea Bo2g051420 I 0.758
Bo4g151770 Brassica oleracea Bo4g151770 I 0.758
Bra032153 Brassica rapa Bra032153 I 0.758
Bra039733 Brassica rapa Bra039733 I 0.758
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.758
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.758
Sb01g014650 Sorghum bicolor Sb01g014650 I 0.758
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.758
LBD10 Arabidopsis lyrata scaffold_400352.1 I 0.758
TCM_024217 Theobroma cacao TCM_024217 I 0.758
29929.m004500 Ricinus communis 29929.m004500 I 0.758
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.758
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.758
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.758
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.758
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.758
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.758
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.758
Lus10009337.g Linum usitatissimum Lus10009337.g I 0.758
Lus10019633.g Linum usitatissimum Lus10019633.g I 0.758
MDP0000643326 Malus domestica MDP0000643326 I 0.758
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.758
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.758
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.758
PK29334.1 Cannabis sativa PK29334.1 I 0.750
BGIOSGA013119 Oryza indica BGIOSGA013119 I 0.747
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.747
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I 0.747
ONIVA11G15310 Oryza nivara ONIVA11G15310 I 0.747
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I 0.747
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I 0.747
OS03G0612400 Oryza sativa OS03G0612400 I 0.747
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.747
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.747
Si002599m.g Setaria italica Si002599m.g I 0.747
Si024114m.g Setaria italica Si024114m.g I 0.747
Si036905m.g Setaria italica Si036905m.g I 0.747
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.747
Traes_4BS_C1F4F41E9 Triticum aestivum Traes_4BS_C1F4F41E9 I 0.747
Traes_4DS_72ABC3EE5 Triticum aestivum Traes_4DS_72ABC3EE5 I 0.747
AS2 Vitis vinifera VIT_00s0340g00090 I 0.747
Cla005851 Citrullus lanatus Cla005851 I 0.747
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.747
mgf014755m Mimulus guttatus mgf014755m I 0.747
Bostr.27895s0126 Boechera stricta Bostr.27895s0126 N 0.747
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.747
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.747
MDP0000273432 Malus domestica MDP0000273432 I 0.747
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.747
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.747
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.747
SapurV1A.0811s0010 Salix purpurea SapurV1A.0811s0010 I 0.747
Thhalv10000525m.g Eutrema salsugineum Thhalv10000525m.g I 0.747
LBD6 Oryza indica BGIOSGA004955 I 0.737
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.737
F775_20715 Aegilops tauschii F775_20715 I 0.737
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.737
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.737
OB01G48740 Oryza brachyantha OB01G48740 I 0.737
OB03G34080 Oryza brachyantha OB03G34080 I 0.737
OB05G24560 Oryza brachyantha OB05G24560 I 0.737
OBART01G39990 Oryza barthii OBART01G39990 I 0.737
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.737
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.737
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.737
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.737
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.737
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.737
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.737
LBD6 Oryza sativa OS01G0889400 I 0.737
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.737
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.737
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.737
Traes_4AL_C060BF9F6 Triticum aestivum Traes_4AL_C060BF9F6 I 0.737
Ca_18206 Cicer arietinum Ca_18206 N 0.737
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.737
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.737
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.727
BRADI1G14677 Brachypodium distachyon BRADI1G14677 N 0.727
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.727
F775_21760 Aegilops tauschii F775_21760 I 0.727
GRMZM2G362627 Zea mays GRMZM2G362627 I 0.727
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.727
MTR_3g452660 Medicago truncatula MTR_3g452660 N 0.727
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.727
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.727
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.727
OS05G0417000 Oryza sativa OS05G0417000 I 0.727
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.727
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.727
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.727
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.717
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.717
GRMZM2G154320 Zea mays GRMZM2G154320 N 0.717
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.717
Ca_20200 Cicer arietinum Ca_20200 I 0.717
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.717
Bo9g017470 Brassica oleracea Bo9g017470 I 0.707
Bo9g021590 Brassica oleracea Bo9g021590 N 0.707
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.707
GRMZM2G133806 Zea mays GRMZM2G133806 I 0.707
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.707
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.707
TRIUR3_06488 Triticum urartu TRIUR3_06488 I 0.707
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.707
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.707
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.707
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707